Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_15260 and PS417_15265 overlap by 4 nucleotidesPS417_15265 and PS417_15270 are separated by 15 nucleotidesPS417_15270 and PS417_15275 are separated by 5 nucleotidesPS417_15275 and PS417_15280 are separated by 1 nucleotides PS417_15260: PS417_15260 - protein phosphatase, at 3,346,472 to 3,347,185 _15260 PS417_15265: PS417_15265 - type VI secretion protein VasK, at 3,347,182 to 3,350,517 _15265 PS417_15270: PS417_15270 - membrane protein, at 3,350,533 to 3,351,393 _15270 PS417_15275: PS417_15275 - type VI secretion protein, at 3,351,399 to 3,352,727 _15275 PS417_15280: PS417_15280 - type VI secretion protein, at 3,352,729 to 3,353,178 _15280
Group Condition PS417_15260 PS417_15265 PS417_15270 PS417_15275 PS417_15280
phage P. simiae OR1 MOI 0.1 -0.4 +0.1 +0.2 +0.4 -0.7
stress methylglyoxal 0.032 vol% -0.7 +0.2 +0.3 -1.0 +0.7
root root sample 6; outgrowth in LB +0.5 +0.4 -0.4 -0.5 -0.6
solid stress Fraxetin 3 mM; solid stress -0.3 +0.2 +0.6 -0.4 -0.4
carbon source L-Valine (C) +0.6 -0.2 +0.1 -0.8 +0.4
soil soil sample 5; outgrowth in LB +0.3 +0.3 +0.0 +0.5 -0.9
phage JP1 MOI 10 +1.2 +0.2 -0.1 -0.1 -0.5
phage P. simiae ORA MOI 0.1 +0.9 +0.1 -0.4 +0.4 -0.3
phage JP1 MOI 1 +1.4 +0.5 -0.5 -0.1 -0.4
phage JP1 MOI 1 +1.4 +0.3 -0.1 -0.4 -0.3
phage P. simiae OR Antrim MOI 0.1 +0.8 +0.4 -0.5 +0.4 -0.0
phage P. simiae Grant Run MOI 10 +0.9 +0.3 -0.4 -0.0 +0.2
phage P. simiae ORA MOI 10 +0.8 +0.2 -0.3 +0.5 -0.1
phage P. simiae Grant Run MOI 0.1 +1.1 +0.3 -0.3 +0.2 -0.1
phage P. simiae OR Antrim MOI 1 +0.9 +0.3 -0.2 +0.6 -0.3
phage P. simiae Grant Run MOI 0.1 +1.2 +0.3 -0.3 +0.6 -0.3
nophagecontrol Only library +0.9 +0.3 +0.4 -0.3 +0.2
phage JP1 MOI 10 +1.3 +0.5 +0.1 -0.4 +0.1
rhizosphere rhizosphere sample 2; outgrowth in LB +0.6 +0.6 +0.1 +0.6 -0.3
phage JP1 MOI 0.1 +1.5 +0.5 +0.1 -0.3 -0.0
seeds Growth on radish seeds for 72 hours +0.4 -0.3 +0.6 +1.0 +0.0
stress Choline chloride 300 mM +0.9 +0.2 -0.1 +0.3 +0.4
motility outer cut, LB soft agar motility assay +0.7 +0.3 +0.2 +0.4 +0.2
phage P. simiae ORA MOI 1 +0.8 +0.2 +0.3 +0.3 +0.2
rhizosphere rhizosphere sample 8; outgrowth in LB +0.7 +0.5 -0.2 +0.5 +0.4
motility outer cut, LB soft agar motility assay +0.5 +0.2 +0.2 +0.6 +0.4
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +0.2 +0.0 +0.9 -0.4 +1.3
phage P. simiae Grant Run MOI 10 +1.1 +0.3 +0.2 +0.6 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.7 +0.3 -0.2 -0.1 +4.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days -0.1 -0.0 +0.5 +0.5 +4.1
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