Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_15205	PS417_15210	PS417_15215	PS417_15220	PS417_15225
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.6	-0.1	-1.9	+0.0	-0.6
soil	soil sample 6; outgrowth in LB	-0.1	+0.2	-2.7	-0.3	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.0	-0.1	-1.5	-0.1	-0.7
phage	P. simiae OR1 MOI 0.1	-0.1	+0.1	-2.2	-0.1	+0.0
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.1	-0.1	-1.4	-0.2	-0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	-0.2	-1.5	+0.2	-0.5
soil	soil sample 7; outgrowth in LB	+0.0	-0.2	-0.5	-0.4	-1.0
phage	P. simiae OR Antrim MOI 1	+0.3	-0.3	-1.1	+0.0	-1.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.2	+0.6	-2.0	-0.1	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	-0.4	+1.2	-0.1	-2.4
stress	Gentamicin 0.008 mg/ml	+0.1	-0.1	-0.5	-0.2	-1.2
carbon source	2-Deoxy-D-ribonic lithium salt 10 mM (C)	+0.1	+0.1	-1.1	-0.1	-0.8
motility	outer cut, LB soft agar motility assay	+0.2	-0.2	-0.6	-0.1	-1.0
seeds	Growth on radish seeds for 72 hours	+0.3	-0.5	+0.2	+0.0	-1.7
carbon source	2'-Deoxyinosine 5 mM (C)	+0.1	+0.3	-1.1	-0.3	-0.4
rhizosphere	rhizosphere sample 2; outgrowth in LB	+0.1	-0.2	-1.4	-0.1	+0.3
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	+0.5	-0.3	-0.1	-1.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	+0.6	-1.6	-0.1	+0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.4	+0.4	-1.2	-0.2	-0.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X	+0.2	+0.5	-0.6	-0.2	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	+0.4	+0.7	-0.3	-1.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	+0.6	-0.7	+0.2	+0.3
soil	soil sample 8; outgrowth in LB	-0.1	-1.1	+0.7	+0.1	+0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3	+1.0	-0.1	-0.1	-0.6
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.1	+1.3	+0.4	+0.3	-1.2
carbon source	L-Valine (C)	+0.3	+0.8	+0.4	-0.0	-0.6
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.3	-0.1	+1.1	+0.1	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.1	+0.5	+1.1	-0.0	-0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	+0.7	+0.5	+0.0	+0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.0	-0.5	+2.4	-0.2	+0.6