Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_15185	PS417_15190	PS417_15200	PS417_15205	PS417_15210
rhizosphere	rhizosphere sample 2; outgrowth in LB	+0.0	-0.0	-2.2	+0.1	-0.2
soil	soil sample 8; outgrowth in LB	-0.1	-0.0	-0.4	-0.1	-1.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	-0.1	-1.2	-0.3	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	-0.1	-1.6	-0.4	+0.6
motility	outer cut, LB soft agar motility assay	-0.2	-0.2	-1.1	+0.2	-0.2
seeds	Growth on radish seeds for 72 hours	+0.3	-0.1	-1.0	+0.3	-0.5
root	root sample 6; outgrowth in LB	+0.4	-0.1	-0.2	+0.2	-1.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	+0.2	-0.8	-0.1	-0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.3	+0.0	-1.4	+0.2	+0.7
phage	JP1 MOI 0.1	+0.1	+0.1	-1.0	+0.4	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.2	-0.0	-0.5	+0.4	+0.4
no phage control	Time6-nophage	-0.2	-0.0	+0.6	+0.3	-0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.4	-0.3	-0.9	-0.0	+1.0
phage	FRSphage	-0.6	-0.1	+0.9	-0.1	+0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.3	+0.2	+0.8	-0.1	-0.2
agar plate interaction control	Taped volatile agar plate with no fungus	-0.1	-0.2	+1.0	-0.0	-0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.3	-0.2	+0.7	-0.2	+0.5
carbon source	octanoate (C)	+0.3	+0.1	-0.5	+0.2	+0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.1	-0.1	+0.9	-0.3	+0.3
seeds	Growth on radish seeds for 72 hours	-0.1	+0.2	+0.8	+0.2	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.5	+0.1	-0.0	-0.3	+0.6
stress	LB_noSalt with Chloride 500 mM	-0.1	+0.1	+1.1	+0.2	-0.1
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.1	+0.2	+1.2	-0.0	-0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	+0.3	-0.0	+0.3	+1.0
soil	soil sample 5; outgrowth in LB	-0.1	+0.5	+1.1	-0.2	+0.3
phage	P. simiae OR1 MOI 0.1	+0.4	+0.1	+1.1	-0.1	+0.1
carbon source	L-Valine (C)	-0.2	-0.1	+1.0	+0.3	+0.8
phage	P. simiae OR Antrim MOI 1	-0.1	+0.1	+1.6	+0.3	-0.1
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.2	-0.0	+0.9	-0.1	+1.3
phage	P. simiae ORA MOI 0.1	-0.0	+0.2	+1.2	+0.3	+0.5