Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_15175	PS417_15180	PS417_15185	PS417_15190	PS417_15200
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.7	-0.1	-0.1	-1.6
rhizosphere	rhizosphere sample 2; outgrowth in LB	N.D.	+0.2	+0.0	-0.0	-2.2
motility	outer cut, LB soft agar motility assay	N.D.	-0.2	-0.2	-0.2	-1.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Phenylalanine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	N.D.	-0.6	-0.1	-0.1	-0.7
carbon source	2'-Deoxyinosine 5 mM (C)	N.D.	-0.5	-0.2	-0.1	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.0	-0.1	-0.1	-1.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X	N.D.	-0.3	-0.1	-0.2	-0.7
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+0.5	-0.3	+0.0	-1.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	N.D.	-0.3	+0.4	-0.3	-0.9
stress	Nalidixic 0.025 mg/ml	N.D.	+0.3	+0.0	-0.1	-1.0
rhizosphere	rhizosphere sample 8; outgrowth in LB	N.D.	+0.3	+0.1	+0.1	-1.1
agar plate interaction control	Taped volatile agar plate with no fungus	N.D.	-0.7	+0.1	-0.3	+0.3
seeds	Growth on radish seeds for 72 hours	N.D.	+0.2	+0.3	-0.1	-1.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	N.D.	+0.7	-0.2	-0.2	-0.6
phage	JP1 MOI 0.1	N.D.	+0.5	+0.1	+0.1	-1.0
phage	Wcs_1	N.D.	-0.7	+0.0	-0.1	+0.5
phage	FRSphage	N.D.	-0.3	-0.6	-0.1	+0.9
phage	P. simiae Grant Run MOI 10	N.D.	-0.6	+0.1	+0.1	+0.6
soil	soil sample 3; outgrowth in LB	N.D.	-0.6	+0.2	-0.0	+0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	-0.5	-0.0	+0.0	+0.9
agar plate interaction control	Taped volatile agar plate with no fungus	N.D.	-0.3	-0.1	-0.2	+1.0
carbon source	L-Valine (C)	N.D.	-0.1	-0.2	-0.1	+1.0
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	N.D.	-0.2	-0.1	+0.2	+1.2
phage	P. simiae OR1 MOI 0.1	N.D.	-0.4	+0.4	+0.1	+1.1
seeds	Growth on radish seeds for 72 hours	N.D.	+0.4	-0.1	+0.2	+0.8
soil	soil sample 5; outgrowth in LB	N.D.	-0.2	-0.1	+0.5	+1.1
stress	LB_noSalt with Chloride 500 mM	N.D.	+0.3	-0.1	+0.1	+1.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+0.6	-0.3	+0.2	+0.8
phage	P. simiae ORA MOI 0.1	N.D.	+0.1	-0.0	+0.2	+1.2
phage	P. simiae OR Antrim MOI 1	N.D.	-0.0	-0.1	+0.1	+1.6