Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_15150	PS417_15155	PS417_15160	PS417_15165	PS417_15170
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	-0.1	-0.9	-0.4	-1.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.1	+0.2	-1.1	-0.4	-0.1
supernatant control	Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB	+0.1	-0.0	-0.8	-0.4	-0.2
soil	soil sample 2; outgrowth in LB	-0.1	+0.1	-1.4	-0.0	+0.1
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	+0.1	-0.5	-0.9	-0.1	+0.1
solid stress	80% Methanol 3 mM; solid stress	+0.1	-0.0	-1.2	-0.1	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	-0.0	-1.0	-0.2	+0.1
carbon source	2'-Deoxyinosine 5 mM (C)	-0.2	+0.1	-0.4	-0.7	+0.5
seeds	Growth on radish seeds for 72 hours	-0.2	+0.1	-0.5	-0.5	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.1	+0.3	-0.9	+0.1	+0.1
agar plate interaction control	Taped volatile agar plate with no fungus	-0.1	+0.5	-0.4	-0.4	-0.0
soil	soil sample 4; outgrowth in LB	+0.1	+0.3	-0.7	-0.0	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	-0.1	+1.2	+0.0	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	-0.2	+0.2	-0.4	+0.7
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.3	+0.2	+0.9	-0.2	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	-0.1	+0.7	+0.2	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.1	+0.1	+0.7	-0.5	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	-0.3	+1.0	-0.1	+0.1
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.3	-0.1	+0.6	+0.3	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.0	-0.2	+1.2	-0.5	+0.2
soil	soil sample 7; outgrowth in LB	+0.4	+0.2	+0.7	-0.1	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Threonine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	+0.2	+1.1	-0.1	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.2	+0.1	+0.9	+0.1	+0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.2	+0.3	+1.1	+0.1	-0.0
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5	+0.1	-0.2	+0.3	+0.7
carbon source	L-Valine (C)	+0.1	+0.2	-0.1	+0.3	+1.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	+0.2	+1.5	-0.0	-0.1
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.2	+0.2	+0.9	+0.7	-0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.2	+0.3	+0.9	+0.9	+0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.3	+0.1	+2.1	-0.4	+0.0