Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

Or view all 552 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PS417_15145	PS417_15150	PS417_15155	PS417_15160	PS417_15165
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	-0.1	+0.2	-1.1	-0.4
soil	soil sample 2; outgrowth in LB	N.D.	-0.1	+0.1	-1.4	-0.0
seeds	Growth on radish seeds for 72 hours	N.D.	-0.3	-0.0	-0.5	-0.5
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	N.D.	+0.1	-0.5	-0.9	-0.1
solid stress	80% Methanol 3 mM; solid stress	N.D.	+0.1	-0.0	-1.2	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.1	-0.1	-0.9	-0.4
carbon source	2'-Deoxyinosine 5 mM (C)	N.D.	-0.2	+0.1	-0.4	-0.7
supernatant control	Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB	N.D.	+0.1	-0.0	-0.8	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.3	-0.0	-1.0	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	-0.1	+0.3	-0.9	+0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	N.D.	+0.1	+0.3	-0.7	-0.3
agar plate interaction control	Taped volatile agar plate with no fungus	N.D.	-0.1	+0.5	-0.4	-0.4
stress	Doxycycline hyclate 0.001 mg/ml	N.D.	+0.2	+0.2	-0.7	+0.2
phage	JP1 MOI 1	N.D.	+0.3	+0.1	-0.6	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	N.D.	+0.1	+0.1	+0.7	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.4	-0.1	+0.7	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.0	-0.2	+1.2	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.1	-0.3	+1.0	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	N.D.	-0.0	-0.1	+0.9	-0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	-0.3	+0.2	+0.9	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.3	-0.1	+1.2	+0.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	N.D.	-0.2	+0.1	+0.9	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Threonine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.2	+0.2	+1.1	-0.1
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	N.D.	+0.3	-0.1	+0.6	+0.3
soil	soil sample 7; outgrowth in LB	N.D.	+0.4	+0.2	+0.7	-0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	-0.2	+0.3	+1.1	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.1	+0.2	+1.5	-0.0
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	N.D.	+0.2	+0.2	+0.9	+0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	+0.2	+0.3	+0.9	+0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	N.D.	+0.3	+0.1	+2.1	-0.4