Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_15140	PS417_15145	PS417_15150	PS417_15155	PS417_15160
soil	soil sample 2; outgrowth in LB	-0.6	N.D.	-0.1	+0.1	-1.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.8	N.D.	-0.1	+0.2	-1.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.8	N.D.	+0.1	-0.1	-0.9
soil	soil sample 6; outgrowth in LB	-0.9	N.D.	-0.1	+0.1	-0.7
supernatant control	Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB	-0.6	N.D.	+0.1	-0.0	-0.8
solid stress	80% Methanol 3 mM; solid stress	-0.1	N.D.	+0.1	-0.0	-1.2
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	-0.0	N.D.	+0.1	-0.5	-0.9
soil	soil sample 3; outgrowth in LB	-1.0	N.D.	+0.2	-0.1	+0.1
soil	soil sample 4; outgrowth in LB	-0.5	N.D.	+0.1	+0.3	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.0	N.D.	+0.3	-0.0	-1.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.7	N.D.	-0.4	-0.1	+0.7
seeds	Growth on radish seeds for 72 hours	+0.6	N.D.	-0.3	-0.0	-0.5
root	root sample 6; outgrowth in LB	-0.9	N.D.	+0.1	+0.2	+0.3
phage	P. simiae ORA MOI 0.1	-0.6	N.D.	+0.0	-0.2	+0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	N.D.	-0.1	-0.3	+1.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.4	N.D.	-0.1	-0.0	+0.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	N.D.	+0.0	-0.2	+0.8
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.4	N.D.	-0.3	+0.2	+0.9
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.5	N.D.	-0.2	+0.1	+0.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.5	N.D.	+0.1	+0.1	+0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	N.D.	-0.3	-0.1	+1.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	N.D.	+0.0	-0.2	+1.2
soil	soil sample 7; outgrowth in LB	-0.4	N.D.	+0.4	+0.2	+0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Threonine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	N.D.	-0.2	+0.2	+1.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.1	N.D.	-0.2	+0.3	+1.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.3	N.D.	-0.0	+0.1	+0.9
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.1	N.D.	+0.2	+0.2	+0.9
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.3	N.D.	+0.1	+0.1	+0.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	N.D.	+0.1	+0.2	+1.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.4	N.D.	+0.3	+0.1	+2.1