Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_15125	PS417_15135	PS417_15140	PS417_15145	PS417_15150
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.8	-2.4	-0.7	N.D.	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	-3.1	-0.5	N.D.	+0.1
root	root sample 6; outgrowth in LB	-2.1	-1.1	-0.9	N.D.	+0.1
solid stress	Fraxetin 3 mM; solid stress	+0.3	-3.7	-0.3	N.D.	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.6	-3.2	-0.5	N.D.	-0.2
soil	soil sample 6; outgrowth in LB	-1.3	-0.7	-0.9	N.D.	-0.1
carbon source	2'-Deoxyinosine 5 mM (C)	-1.5	-0.5	-0.6	N.D.	-0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.6	-1.8	-0.2	N.D.	+0.0
phage	P. simiae Grant Run MOI 10	-1.3	-1.4	+0.2	N.D.	+0.0
soil	soil sample 5; outgrowth in LB	-0.2	-2.2	-0.3	N.D.	+0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.1	-2.3	-0.2	N.D.	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.6	-2.9	-0.2	N.D.	+0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	-1.5	-0.3	N.D.	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.2	-1.9	-0.4	N.D.	+0.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.0	-1.4	-0.4	N.D.	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.0	-1.7	-0.5	N.D.	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.8	+0.6	-0.2	N.D.	-0.3
agar plate interaction	Taped volatile agar plate with Trichoderma atroviridae IMI	+0.4	-2.0	+0.2	N.D.	-0.1
soil	soil sample 3; outgrowth in LB	+0.9	-1.5	-1.0	N.D.	+0.2
soil	soil sample 2; outgrowth in LB	-1.3	+0.6	-0.6	N.D.	-0.1
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.4	-1.5	+0.3	N.D.	+0.1
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	+0.4	-1.3	+0.5	N.D.	+0.0
soil	soil sample 4; outgrowth in LB	+1.1	-1.0	-0.5	N.D.	+0.1
phage	P. simiae OR Antrim MOI 1	-1.2	+1.2	-0.0	N.D.	-0.0
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.6	-1.0	+0.5	N.D.	-0.1
soil	soil sample 8; outgrowth in LB	+0.9	-1.0	-0.0	N.D.	+0.3
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.2	+1.5	-0.3	N.D.	+0.3
phage	JP1 MOI 10	+0.6	+1.2	-0.2	N.D.	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+1.0	+1.0	+0.2	N.D.	+0.1
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.9	+1.5	-0.0	N.D.	+0.0