Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_15115	PS417_15120	PS417_15125	PS417_15135	PS417_15140
stress	Cisplatin 0.01 mg/ml	-5.3	-5.0	-0.0	-0.1	-0.2
stress	Nalidixic 0.025 mg/ml	-2.8	-2.8	+0.1	-0.6	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	-0.5	-0.5	-3.1	-0.5
stress	Nalidixic 0.015 mg/ml	-2.1	-2.6	-0.4	+0.5	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.7	-0.1	-0.8	-2.4	-0.7
root	root sample 6; outgrowth in LB	-0.6	+0.2	-2.1	-1.1	-0.9
solid stress	Fraxetin 3 mM; solid stress	-0.2	-0.0	+0.3	-3.7	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	-0.4	+0.6	-3.2	-0.5
soil	soil sample 5; outgrowth in LB	-0.4	-0.4	-0.2	-2.2	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.1	-0.1	-0.5	-1.5	-0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.2	-0.4	-0.2	-1.2	-0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.0	-0.9	-0.5	-1.2	+0.3
soil	soil sample 6; outgrowth in LB	-0.2	-0.3	-1.3	-0.7	-0.9
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.2	-0.3	-0.6	-1.8	-0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.1	-0.2	+0.1	-2.3	-0.2
phage	P. simiae Grant Run MOI 10	-0.0	-0.2	-1.3	-1.4	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	-0.1	+0.6	-2.9	-0.2
agar plate interaction	Taped volatile agar plate with Trichoderma atroviridae IMI	-0.7	-0.2	+0.4	-2.0	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-1.3	+0.3	-0.6	-0.8	+0.2
soil	soil sample 3; outgrowth in LB	-0.7	+0.1	+0.9	-1.5	-1.0
stress	Lomefloxacin 0.0001 mM	-1.4	-1.3	+0.0	+0.7	-0.1
soil	soil sample 2; outgrowth in LB	-0.2	-0.6	-1.3	+0.6	-0.6
carbon source	2'-Deoxyinosine 5 mM (C)	+0.4	+0.0	-1.5	-0.5	-0.6
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.1	+0.6	+0.0	-1.1	-0.4
solid stress	80% Methanol 2 mM; solid stress	-0.4	-0.5	+0.7	-1.1	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	+0.2	-1.8	+0.6	-0.2
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.6	+0.3	-0.2	-1.7	+0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.4	-0.5	+0.5	+0.2	+0.4
phage	P. simiae OR Antrim MOI 1	-0.6	-0.2	-1.2	+1.2	-0.0
soil	soil sample 4; outgrowth in LB	-0.3	+0.2	+1.1	-1.0	-0.5