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Protein
Homologs
Fitness for 5 genes in
Pseudomonas simiae WCS417
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500 nt
PS417_15095 and PS417_15100 overlap by 8 nucleotides
PS417_15100 and PS417_15105 overlap by 4 nucleotides
PS417_15105 and PS417_15110 overlap by 4 nucleotides
PS417_15110 and PS417_15115 are separated by 98 nucleotides
PS417_15095: PS417_15095 - hypothetical protein, at 3,301,185 to 3,301,679
_15095
PS417_15100: PS417_15100 - BatB protein, at 3,301,672 to 3,302,760
_15100
PS417_15105: PS417_15105 - membrane protein, at 3,302,757 to 3,304,496
_15105
PS417_15110: PS417_15110 - protein BatD, at 3,304,493 to 3,306,133
_15110
PS417_15115: PS417_15115 - exonuclease SbcD, at 3,306,232 to 3,307,473
_15115
Group
Condition
PS417
_15095
PS417
_15100
PS417
_15105
PS417
_15110
PS417
_15115
stress
Cisplatin 0.01 mg/ml
-4.6
-2.1
-3.8
-4.0
-5.3
stress
Doxycycline hyclate 0.001 mg/ml
-4.5
-1.2
-3.7
-3.5
+0.1
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-2.6
-0.8
-3.7
-2.4
-1.1
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-2.2
-2.2
-3.7
-1.4
-0.9
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-4.1
-1.3
-2.6
-1.7
-0.5
stress
Polymyxin B sulfate 0.006 mg/ml
-2.6
-2.8
-2.2
-2.2
+0.0
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-2.2
-0.9
-4.4
-2.1
+0.1
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-2.4
-0.1
-3.0
-2.8
-0.6
stress
Choline chloride 300 mM
-2.5
-1.6
-2.4
-2.3
-0.1
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-3.3
-0.4
-2.8
-2.1
-0.1
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-0.9
-3.3
-1.9
-1.5
-0.4
stress
Neomycin 0.04 mg/ml
-2.1
-1.6
-2.0
-1.9
-0.2
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-1.8
-1.3
-2.1
-2.7
+0.4
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-1.9
-0.7
-2.3
-1.9
-0.8
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-1.4
-2.2
-1.6
-2.1
-0.1
stress
LB_noSalt with Chloride 500 mM
-1.9
-1.5
-1.9
-1.5
-0.3
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-1.3
-2.5
-2.1
-0.9
-0.2
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-2.1
-2.3
-0.9
-1.5
-0.1
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-1.8
-0.7
-2.0
-1.9
-0.1
stress
Gentamicin 0.008 mg/ml
-2.0
-1.2
-1.4
-1.5
-0.4
stress
1-ethyl-3-methylimidazolium chloride 200 mM
-1.4
-1.5
-1.6
-2.0
+0.1
stress
Phosphomycin 0.001 mg/ml
-1.9
-1.0
-1.3
-1.8
-0.2
stress
Phosphomycin 0.002 mg/ml
-1.9
-1.6
-1.0
-1.4
-0.1
liquid stress
Fraxetin 3 mM; liquid stress
-2.4
-0.7
-1.4
-1.3
-0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+2.8
+0.9
+1.3
+1.7
+0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+3.0
+2.0
+1.9
+2.8
+0.0
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+3.4
+3.2
+3.9
+4.5
+0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+4.2
+3.4
+4.7
+4.7
+0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+4.8
+4.6
+4.9
+4.6
-0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+5.5
+7.7
+5.3
+5.1
-0.2
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