Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_15010	PS417_15015	PS417_15020	PS417_15025	PS417_15030
soil	soil sample 2; outgrowth in LB	-0.4	N.D.	-0.6	+0.3	-2.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.4	N.D.	-0.3	-0.4	-1.2
rhizosphere	rhizosphere sample 1; outgrowth in LB	-0.3	N.D.	-0.6	-0.5	-0.7
rhizosphere	rhizosphere sample 2; outgrowth in LB	-0.2	N.D.	-0.1	+0.1	-1.8
agar plate interaction control	Taped volatile agar plate with no fungus	+0.1	N.D.	-0.3	-0.1	-1.5
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	N.D.	-0.3	-0.2	-1.0
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.0	N.D.	-0.3	-0.1	-1.1
phage	P. simiae ORA MOI 0.1	-0.1	N.D.	-0.5	+0.3	-1.0
stress	Gentamicin 0.008 mg/ml	-0.3	N.D.	-0.1	+0.3	-1.2
phage	P. simiae OR Antrim MOI 0.1	-0.4	N.D.	+0.2	+0.1	-1.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.1	N.D.	+0.4	+0.0	-1.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	N.D.	-0.1	+0.3	-0.8
phage	P. simiae Grant Run MOI 10	-0.3	N.D.	+0.5	+0.0	-1.2
stress	Nalidixic 0.025 mg/ml	-0.1	N.D.	+0.2	+0.1	-1.2
phage	P. simiae OR1 MOI 0.1	-0.4	N.D.	-0.2	+0.6	-0.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	N.D.	-0.5	-0.5	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.3	N.D.	-0.1	+0.5	-1.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.6	N.D.	-0.3	+0.0	+0.6
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	N.D.	+0.5	-0.2	-0.8
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.1	N.D.	+0.3	+0.5	-0.8
phage	JP1 MOI 1	+0.1	N.D.	-0.5	-0.3	+0.8
phage	Wcs_1	-0.5	N.D.	-0.1	+0.1	+0.9
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.1	N.D.	-0.6	+0.7	+0.3
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	N.D.	-0.3	+0.2	+0.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	N.D.	+0.3	+0.0	+1.1
motility	outer cut, LB soft agar motility assay	-0.4	N.D.	+0.4	+0.5	+0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.3	N.D.	+0.2	+0.3	+1.1
motility	inner cut, LB soft agar motility assay	-0.1	N.D.	+0.6	+0.1	+0.8
stress	Cisplatin 0.01 mg/ml	-0.2	N.D.	+0.3	+0.3	+1.0
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	N.D.	+0.2	+0.4	+1.6