Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_14990	PS417_14995	PS417_15005	PS417_15010	PS417_15015
stress	Gentamicin 0.008 mg/ml	N.D.	-1.8	-0.3	-0.3	N.D.
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	-0.9	-1.0	+0.2	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	-0.1	-1.3	-0.2	N.D.
soil	soil sample 8; outgrowth in LB	N.D.	-0.2	-1.3	+0.0	N.D.
phage	P. simiae ORA MOI 0.1	N.D.	-0.2	-0.9	-0.3	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.7	-0.2	-0.4	N.D.
phage	JP1 MOI 10	N.D.	-0.3	-1.0	+0.1	N.D.
stress	Cobalt chloride 0.16 mM	N.D.	-1.5	+0.4	-0.1	N.D.
soil	soil sample 4; outgrowth in LB	N.D.	-0.6	-0.6	+0.3	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	-0.7	-0.3	+0.3	N.D.
stress	Doxycycline hyclate 0.001 mg/ml	N.D.	+0.3	-0.9	-0.1	N.D.
agar plate interaction control	Taped volatile agar plate with no fungus	N.D.	+0.7	-0.8	-0.4	N.D.
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	-0.7	+0.5	-0.1	N.D.
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+0.5	-0.8	+0.0	N.D.
liquid stress	Scopoletin 3 mM; liquid stress	N.D.	-0.7	+0.5	+0.0	N.D.
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+0.4	-0.7	+0.3	N.D.
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	N.D.	+0.5	-0.7	+0.2	N.D.
rhizosphere	rhizosphere sample 8; outgrowth in LB	N.D.	+0.7	-0.6	-0.0	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.1	+0.9	-0.3	N.D.
phage	P. simiae OR1 MOI 0.1	N.D.	-0.0	+0.9	-0.4	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.6	+0.7	-0.2	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.3	+1.1	-0.3	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Threonine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.5	+0.8	-0.0	N.D.
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	N.D.	+0.8	+0.3	+0.1	N.D.
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	N.D.	+0.7	+0.6	+0.0	N.D.
carbon source	2'-Deoxyinosine 5 mM (C)	N.D.	+0.0	+1.1	+0.3	N.D.
carbon source	Carbon source D-Mannitol 10 mM	N.D.	+0.5	+0.8	+0.2	N.D.
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+2.1	-0.4	-0.2	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	+0.5	+1.2	-0.1	N.D.
carbon source	L-Valine (C)	N.D.	+0.7	+0.6	+0.4	N.D.