Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_14955	PS417_14960	PS417_14965	PS417_14970	PS417_14975
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.3	-4.8	-5.4	-0.5	-0.3
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.3	-4.0	-4.9	-0.8	-0.5
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.3	-4.3	-3.6	-0.5	-0.5
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.3	-4.3	-3.5	-0.8	+0.0
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.5	-4.7	-3.6	-0.5	+0.3
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.4	-3.4	-3.1	-0.5	+0.5
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.2	-2.7	-2.3	-0.3	-0.5
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.4	-2.7	-2.4	-0.4	+0.2
stress	Polymyxin B sulfate 0.006 mg/ml	+0.1	-2.7	-1.4	-0.5	-0.4
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.3	-2.1	-1.9	-0.4	-0.4
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.2	-2.4	-2.0	-0.6	+0.4
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.3	-2.2	-2.4	-0.6	+0.7
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.2	-1.9	-2.2	-0.5	+0.2
stress	Neomycin 0.04 mg/ml	+0.0	-1.5	-0.5	-0.1	+0.1
stress	Spectinomycin 0.4 mg/ml	+0.1	-1.3	-0.2	-0.4	-0.1
stress	Doxycycline hyclate 0.001 mg/ml	+0.2	-1.5	+0.2	-0.4	-0.4
stress	Nalidixic 0.025 mg/ml	-0.1	-0.7	-0.2	-0.4	-0.4
stress	Gentamicin 0.008 mg/ml	+0.1	-1.3	-0.3	-0.0	-0.3
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	+0.0	+0.0	-0.5	+0.1	-1.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	-0.1	-0.6	-0.4	+0.4
phage	JP1 MOI 10	+0.2	-0.1	+0.2	+0.3	-0.9
phage	P. simiae Grant Run MOI 10	-0.0	-0.0	-0.9	+0.3	+0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.2	-0.2	+0.3	-0.6	+0.6
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.1	+0.4	-0.4	+0.5	-0.2
phage	P. simiae OR1 MOI 0.1	-0.0	-0.2	-0.3	+0.2	+0.9
phage	P. simiae OR Antrim MOI 10	+0.0	+0.1	-0.4	-0.2	+1.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.3	+0.3	-0.3	+0.7	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.1	+0.3	-0.4	+0.2	+1.0
supernatant control	Vogels_fungal_media 0.1X	-0.1	-0.2	+0.5	-0.0	+1.0
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.0	-0.1	+1.2	-0.2	+0.8