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Fitness for 5 genes in
Pseudomonas simiae WCS417
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500 nt
PS417_14940 and PS417_14945 are separated by 116 nucleotides
PS417_14945 and PS417_14950 are separated by 5 nucleotides
PS417_14950 and PS417_14955 are separated by 152 nucleotides
PS417_14955 and PS417_14960 are separated by 2 nucleotides
PS417_14940: PS417_14940 - LysR family transcriptional regulator, at 3,262,631 to 3,263,521
_14940
PS417_14945: PS417_14945 - beta-lactamase, at 3,263,638 to 3,265,452
_14945
PS417_14950: PS417_14950 - structural protein MipA, at 3,265,458 to 3,266,261
_14950
PS417_14955: PS417_14955 - hypothetical protein, at 3,266,414 to 3,270,472
_14955
PS417_14960: PS417_14960 - ATPase, at 3,270,475 to 3,271,755
_14960
Group
Condition
PS417
_14940
PS417
_14945
PS417
_14950
PS417
_14955
PS417
_14960
stress
R2A with Polymyxin B sulfate 0.003 mg/ml
-1.1
-4.6
+0.5
+0.3
-4.3
stress
R2A with Polymyxin B sulfate 0.003 mg/ml
-0.9
-3.7
+0.4
+0.5
-4.7
stress
R2A with Polymyxin B sulfate 0.003 mg/ml
-0.6
-3.5
+0.7
+0.3
-4.8
stress
R2A with Polymyxin B sulfate 0.003 mg/ml
-0.1
-4.2
+0.8
+0.3
-4.0
stress
R2A with Polymyxin B sulfate 0.003 mg/ml
+0.2
-3.4
+1.5
+0.3
-4.3
stress
R2A with Polymyxin B sulfate 0.002 mg/ml
-0.6
-3.7
+1.8
+0.4
-3.4
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-5.0
-0.1
-0.6
+0.1
+0.1
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-4.5
-0.0
-0.6
+0.0
-0.2
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-4.7
-0.2
-0.6
+0.1
+0.3
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-5.2
-0.2
+0.6
-0.1
-0.1
stress
R2A with Polymyxin B sulfate 0.003 mg/ml
-1.1
-2.1
+1.1
+0.4
-2.7
stress
R2A with Polymyxin B sulfate 0.002 mg/ml
-0.4
-3.2
+1.5
+0.2
-2.4
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-4.7
+0.1
+0.4
+0.1
+0.1
carbon source
D-Sorbitol (C)
-2.9
-0.1
-0.7
-0.0
-0.0
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-3.2
+0.1
-0.6
+0.2
-0.0
carbon source
D-Sorbitol (C)
-3.2
+0.1
-0.4
-0.0
-0.0
carbon source
Xylitol (C)
-3.5
+0.1
+0.1
+0.0
-0.0
carbon source
2'-Deoxyinosine 5 mM (C)
-2.7
+0.6
-1.2
+0.0
-0.1
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Methionine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
-3.4
+0.1
-0.1
+0.0
+0.1
soil
soil sample 5; outgrowth in LB
-2.7
-0.3
+0.1
-0.0
-0.4
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-4.1
+0.1
+0.5
-0.1
+0.3
stress
R2A with Polymyxin B sulfate 0.002 mg/ml
+0.2
-2.9
+2.1
+0.2
-2.7
carbon source
2-Deoxy-D-Ribose (C)
-3.2
+0.4
-0.5
+0.1
+0.2
stress
R2A with Polymyxin B sulfate 0.002 mg/ml
-1.4
-1.4
+1.7
+0.2
-1.9
carbon source
NAG (C)
-3.3
+0.3
+0.1
-0.0
+0.2
stress
R2A with Polymyxin B sulfate 0.002 mg/ml
-0.5
-2.5
+2.1
+0.3
-2.2
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-tyrosine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
-2.7
-0.3
-0.0
+0.1
+0.3
stress
R2A with Polymyxin B sulfate 0.002 mg/ml
-0.3
-2.2
+1.9
+0.3
-2.1
carbon source
NAG (C)
-2.7
+0.3
+0.4
-0.1
-0.0
stress
Polymyxin B sulfate 0.006 mg/ml
-0.0
+0.3
+0.9
+0.1
-2.7
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