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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF290 and GFF291 overlap by 1 nucleotides
GFF291 and GFF292 are separated by 25 nucleotides
GFF292 and GFF293 are separated by 198 nucleotides
GFF293 and GFF294 are separated by 27 nucleotides
GFF290 - Cell division coordinator CpoB, at 325,065 to 325,814
GFF290
GFF291 - Tol-Pal system peptidoglycan-associated lipoprotein PAL, at 325,814 to 326,332
GFF291
GFF292 - Tol-Pal system beta propeller repeat protein TolB, at 326,358 to 327,584
GFF292
GFF293 - no description, at 327,783 to 327,926
GFF293
GFF294 - Lipid A export permease/ATP-binding protein MsbA, at 327,954 to 329,621
GFF294
Group
Condition
GFF290
GFF291
GFF292
GFF293
GFF294
complex community
Community=arabino-guar; Passage=4
-2.3
-3.2
-4.1
-1.3
N.D.
complex community
Community=Locust bean gum; Passage=4
-2.4
-3.2
-3.9
-1.3
N.D.
complex community
Community=arabino-guar; Passage=4
-3.1
-3.4
-4.2
+0.2
N.D.
complex community
Community=guar; Passage=4
-3.2
-3.1
-4.0
+0.4
N.D.
complex community
Community=arabino-guar; Passage=4
-3.2
-3.3
-4.3
+0.8
N.D.
complex community
Community=Locust bean gum; Passage=4
-3.2
-3.1
-4.1
+0.6
N.D.
complex community
Community=guar; Passage=4
-2.8
-3.2
-4.2
+0.4
N.D.
complex community
Community=Kojac gum; Passage=4
-3.0
-3.0
-4.1
+0.5
N.D.
complex community
Community=arabino-guar; Passage=4
-2.8
-3.3
-3.9
+0.7
N.D.
complex community
Community=Locust bean gum; Passage=4
-2.9
-2.7
-3.8
+0.1
N.D.
complex community
Community=guar; Passage=4
-2.4
-3.5
-4.2
+1.0
N.D.
complex community
Community=guar; Passage=4
-3.2
-2.7
-3.7
+0.8
N.D.
complex community
Community=Locust bean gum; Passage=4
-2.5
-3.2
-3.6
+0.5
N.D.
vitamin
M9 with Supernatant from Cyptococcus
-0.9
-2.2
-1.9
+0.1
N.D.
vitamin
M9 with Supernatant from Cyptococcus
-1.3
-2.0
-1.7
+0.5
N.D.
vitamin
M9 with Supernatant from Cyptococcus
-1.0
-1.8
-1.6
+0.0
N.D.
phage
phage_bap4
-1.1
-1.3
-1.4
-0.3
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.6
-2.0
-1.5
+0.0
N.D.
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.9
-2.0
-1.4
+0.2
N.D.
phage
phage_bap4
-0.8
-1.3
-1.6
-0.5
N.D.
phage
phage_bap4
-0.9
-1.1
-1.3
-0.5
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-1.0
-1.8
-1.4
+0.3
N.D.
vitamin
M9 with Supernatant from Cyptococcus
-1.0
-1.6
-1.6
+0.3
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.8
-1.9
-1.4
+0.2
N.D.
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
-1.5
-1.1
-1.3
+0.1
N.D.
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-1.0
-1.7
-1.3
+0.2
N.D.
phage
phage_bap4
-1.2
-1.3
-1.3
+0.2
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.8
-1.7
-1.3
+0.2
N.D.
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.8
-1.3
-1.5
+0.3
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-1.0
-1.5
-1.3
+0.5
N.D.
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