Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF2914 and GFF2915 are separated by 56 nucleotidesGFF2915 and GFF2916 are separated by 14 nucleotidesGFF2916 and GFF2917 overlap by 11 nucleotidesGFF2917 and GFF2918 are separated by 56 nucleotides GFF2914 - Glutamine ABC transporter, ATP-binding protein GlnQ, at 341,379 to 342,107 GFF2914 GFF2915 - ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines), at 342,164 to 342,958 GFF2915 GFF2916 - UDP-glucose 4-epimerase (EC 5.1.3.2), at 342,973 to 343,794 GFF2916 GFF2917 - Gluconolactonase (EC 3.1.1.17), at 343,784 to 344,674 GFF2917 GFF2918 - TRAP-type C4-dicarboxylate transport system, periplasmic component, at 344,731 to 345,723 GFF2918
Group Condition GFF2914 GFF2915 GFF2916 GFF2917 GFF2918
complex community Community=Locust bean gum; Passage=4 -0.5 N.D. -0.4 -0.2 -0.1
complex community Community=guar; Passage=4 +0.4 N.D. +0.5 -1.4 -0.5
phage phage_bap4 -0.5 N.D. -0.3 -0.4 +0.3
complex community Community=Locust bean gum; Passage=4 -0.2 N.D. -0.2 -0.8 +0.5
vitamin M9 with calcium pantothenate 10 mg/mL -0.3 N.D. -0.2 -0.4 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.2 N.D. -0.1 -0.4 -0.0
vitamin M9 with Supernatant from Cyptococcus -0.3 N.D. +0.0 -0.5 +0.0
complex community Community=guar; Passage=4 -0.4 N.D. -0.1 -0.6 +0.4
complex community Community=Locust bean gum; Passage=4 -0.3 N.D. -0.1 -0.3 +0.2
phage phage_bap4 -0.3 N.D. -0.3 -0.2 +0.2
complex community Community=arabino-guar; Passage=4 -0.4 N.D. -0.4 -0.0 +0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.2 N.D. -0.3 -0.2 -0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL -0.1 N.D. -0.0 -0.6 +0.3
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.3 N.D. -0.2 -0.3 -0.1
phage phage_bap4 +0.1 N.D. -0.3 -0.1 +0.2
complex community Community=guar; Passage=4 +0.9 N.D. -0.8 -0.2 +0.0
vitamin M9 with Supernatant from Cyptococcus +0.1 N.D. -0.4 +0.2 +0.2
complex community Community=Locust bean gum; Passage=4 -0.3 N.D. +0.3 -0.1 +0.1
complex community Community=arabino-guar; Passage=4 -0.4 N.D. -0.4 +0.5 +0.5
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL -0.4 N.D. +0.4 +0.0 +0.3
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.4 N.D. -0.1 -0.1 +0.2
phage phage_bap4 +0.1 N.D. -0.1 -0.1 +0.5
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.3 N.D. +0.1 +0.2 +0.5
complex community Community=arabino-guar; Passage=4 +0.4 N.D. -0.1 -0.3 +0.5
no phage control no phage control +0.2 N.D. -0.1 +0.2 +0.2
complex community Community=arabino-guar; Passage=4 +0.1 N.D. -0.0 +0.4 +0.2
phage phage_bap4 +0.3 N.D. +0.1 -0.1 +0.4
complex community Community=Kojac gum; Passage=4 +0.4 N.D. -0.5 +0.4 +0.5
complex community Community=Locust bean gum; Passage=1 +0.4 N.D. +0.1 -0.1 +0.3
complex community Community=guar; Passage=4 +0.8 N.D. +0.2 +0.1 -0.5
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