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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF2910 and GFF2911 are separated by 111 nucleotides
GFF2911 and GFF2912 are separated by 99 nucleotides
GFF2912 and GFF2913 overlap by 4 nucleotides
GFF2913 and GFF2914 overlap by 17 nucleotides
GFF2910 - BUG/TctC family periplasmic protein, at 337,899 to 338,897
GFF2910
GFF2911 - Predicted D-glucarate or D-galactorate regulator, GntR family, at 339,009 to 339,893
GFF2911
GFF2912 - ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines), at 339,993 to 340,742
GFF2912
GFF2913 - ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines), at 340,739 to 341,395
GFF2913
GFF2914 - Glutamine ABC transporter, ATP-binding protein GlnQ, at 341,379 to 342,107
GFF2914
Group
Condition
GFF2910
GFF2911
GFF2912
GFF2913
GFF2914
complex community
Community=arabino-guar; Passage=4
+0.2
-1.3
-0.2
-1.4
-0.4
complex community
Community=Locust bean gum; Passage=4
+0.0
-1.8
+0.3
-1.0
-0.3
complex community
Community=Locust bean gum; Passage=4
-0.5
-1.3
-0.3
-0.1
-0.3
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.0
-1.4
-0.1
-0.3
-0.1
complex community
Community=arabino-guar; Passage=4
-0.0
-1.7
+0.0
+0.2
-0.4
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
-0.2
-1.3
-0.0
-0.0
-0.2
complex community
Community=guar; Passage=4
-0.1
-1.4
-0.0
-0.7
+0.9
complex community
Community=arabino-guar; Passage=4
-0.2
+0.1
+0.3
-2.0
+0.4
complex community
Community=guar; Passage=4
+0.5
-0.9
+0.1
-1.3
+0.4
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.0
-0.4
-0.0
-0.7
-0.1
complex community
Community=arabino-guar; Passage=4
+0.3
-0.6
-0.5
-0.5
+0.1
vitamin
M9 with Supernatant from Cyptococcus
-0.1
-0.6
-0.0
-0.2
-0.2
vitamin
M9 with Supernatant from Cyptococcus
+0.0
-0.5
-0.1
-0.3
-0.2
phage
phage_bap4
-0.1
-0.6
-0.2
+0.5
-0.5
vitamin
M9 with calcium pantothenate 10 mg/mL
+0.2
-0.3
+0.1
-0.3
-0.3
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.1
-0.2
-0.1
-0.6
+0.3
complex community
Community=Locust bean gum; Passage=4
+0.3
-0.6
+0.2
+0.2
-0.5
complex community
Community=guar; Passage=4
+0.2
-1.3
+0.2
-0.3
+0.8
complex community
Community=guar; Passage=4
+0.1
-0.3
+0.3
-0.1
-0.4
complex community
Community=Locust bean gum; Passage=1
+0.1
-0.0
+0.1
-0.9
+0.4
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.0
-0.4
-0.2
-0.1
+0.4
vitamin
M9 with Supernatant from Cyptococcus
-0.2
-0.3
-0.0
+0.6
-0.3
complex community
Community=Kojac gum; Passage=4
+0.5
-1.1
-0.4
+0.4
+0.4
phage
phage_bap4
+0.1
-0.5
+0.0
+0.6
-0.3
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.1
-0.5
-0.1
+0.5
+0.3
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.1
-0.2
+0.2
-0.3
+0.4
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
+0.0
-0.4
-0.0
+0.4
+0.3
complex community
Community=Kojac gum; Passage=1
+0.1
-0.3
+0.1
+0.3
+0.3
phage
phage_bap4
-0.2
+0.4
-0.0
+0.4
+0.3
phage
phage_bap4
-0.0
+0.3
+0.1
+0.5
+0.0
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