Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_14850	PS417_14855	PS417_14860	PS417_14865	PS417_14870
stress	methylglyoxal 0.032 vol%	-0.6	-0.9	N.D.	-0.7	+0.1
phage	P. simiae ORA MOI 0.1	-0.2	-0.9	N.D.	-0.2	-0.7
supernatant	RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	-0.6	-0.5	N.D.	-0.3	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.9	-0.2	N.D.	+0.1	+0.2
phage	P. simiae OR Antrim MOI 1	-0.5	-1.1	N.D.	+0.0	+0.1
phage	P. simiae ORA MOI 0.1	-0.4	-0.8	N.D.	+0.1	-0.3
no phage control	no phage control	+0.2	-0.5	N.D.	-0.2	-0.7
phage	P. simiae OR Antrim MOI 10	+0.2	-1.1	N.D.	-0.2	+0.0
seeds	Growth on radish seeds for 72 hours	-0.8	-0.4	N.D.	+0.3	-0.1
seeds	Growth on radish seeds for 72 hours	-0.2	-1.7	N.D.	+0.3	+0.6
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.7	+0.2	N.D.	+0.0	-0.5
seeds	Growth on radish seeds for 24 hours	-0.6	-0.4	N.D.	-0.2	+0.5
stress	Lomefloxacin 0.0001 mM	-0.5	+0.3	N.D.	+0.2	-0.8
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	+0.5	-0.6	N.D.	+0.1	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.2	+0.1	N.D.	+0.2	+0.4
carbon source	L-Asparagine (C)	+0.7	-0.9	N.D.	+0.0	-0.3
liquid stress	80% Methanol 3 mM; liquid stress	-0.7	+0.6	N.D.	-0.0	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-1.1	+0.7	N.D.	+0.1	-0.1
motility	inner cut, LB soft agar motility assay	-0.3	+0.7	N.D.	+0.0	-0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.3	+0.3	N.D.	+0.5	-0.6
supernatant control	Vogels_fungal_media 0.1X	+0.5	-0.7	N.D.	-0.1	+0.5
phage	Wcs_1	+0.6	-0.7	N.D.	-0.1	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.8	+0.0	N.D.	+0.3	+0.7
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.9	-0.4	N.D.	+0.3	-0.5
carbon source	L-Valine (C)	+1.4	-0.7	N.D.	+0.0	-0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	-0.4	+0.0	N.D.	+1.0	-0.2
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.4	+0.4	N.D.	+0.2	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.3	+0.5	N.D.	-0.2	+0.5
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.5	+1.2	N.D.	+0.2	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	+0.6	N.D.	+0.4	+0.7