Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_14840	PS417_14845	PS417_14850	PS417_14855	PS417_14860
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.0	-0.8	-0.5	+0.1	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.0	-0.1	-1.2	+0.1	N.D.
phage	P. simiae OR Antrim MOI 0.1	-0.8	-0.1	-0.8	-0.1	N.D.
phage	P. simiae OR Antrim MOI 1	-0.0	-0.1	-0.5	-1.1	N.D.
phage	P. simiae OR Antrim MOI 10	-0.5	-0.2	+0.2	-1.1	N.D.
seeds	Growth on radish seeds for 72 hours	+0.7	-0.4	-0.2	-1.7	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	+0.2	-1.9	-0.2	N.D.
stress	methylglyoxal 0.032 vol%	-0.0	+0.2	-0.6	-0.9	N.D.
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x	-0.5	+0.3	-0.6	-0.4	N.D.
soil	soil sample 8; outgrowth in LB	-0.9	+0.0	+0.3	-0.5	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.2	-0.2	+0.1	+0.3	N.D.
carbon source	Carbon source D-Mannitol 2.5 mM	+0.5	-0.3	-0.7	-0.4	N.D.
phage	JP1 MOI 1	-1.0	+0.5	+0.2	-0.6	N.D.
liquid stress	80% Methanol 3 mM; liquid stress	-0.5	-0.1	-0.7	+0.6	N.D.
seeds	Growth on radish seeds for 72 hours	+0.7	-0.2	-0.8	-0.4	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.1	-0.2	+0.2	+0.7	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.1	-0.2	-1.1	+0.7	N.D.
carbon source	L-Asparagine (C)	-0.2	-0.1	+0.7	-0.9	N.D.
seeds	Growth on radish seeds for 24 hours	+0.7	+0.3	-0.6	-0.4	N.D.
soil	soil sample 2; outgrowth in LB	-1.1	+0.3	+1.0	-0.2	N.D.
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	+0.5	-0.2	+0.5	-0.6	N.D.
carbon source	L-Valine (C)	+0.1	-0.6	+1.4	-0.7	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.7	+0.6	+0.3	+0.2	N.D.
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.6	+0.6	+0.2	+0.5	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.7	-0.3	+0.5	+0.3	N.D.
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	+0.7	+0.9	-0.4	N.D.
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.8	+0.4	+0.7	-0.5	N.D.
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.4	+0.5	+0.5	+1.2	N.D.
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.5	+0.3	+0.1	+1.0	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+1.7	+0.2	+0.1	+0.1	N.D.