Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_14835	PS417_14840	PS417_14845	PS417_14850	PS417_14855
phage	P. simiae OR Antrim MOI 1	-1.1	-0.0	-0.1	-0.5	-1.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.0	-0.2	-0.3	-0.4	-0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.6	-1.0	-0.1	-1.2	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	-1.0	-0.8	-0.5	+0.1
seeds	Growth on radish seeds for 72 hours	-1.4	-0.2	-0.1	-0.1	-0.9
rhizosphere	rhizosphere sample 2; outgrowth in LB	-1.0	-0.7	-0.5	-0.0	-0.4
phage	P. simiae Grant Run MOI 0.1	-1.6	-0.6	-0.1	-0.5	+0.3
soil	soil sample 8; outgrowth in LB	-1.3	-0.9	+0.0	+0.3	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.8	+0.3	+0.2	-1.9	-0.2
phage	P. simiae OR Antrim MOI 10	-0.7	-0.5	-0.2	+0.2	-1.1
phage	JP1 MOI 1	-1.3	-0.6	+0.2	-0.2	-0.2
phage	P. simiae OR Antrim MOI 1	-1.2	-0.2	-0.4	-0.7	+0.3
seeds	Growth on radish seeds for 72 hours	-0.4	+0.7	-0.4	-0.2	-1.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.9	-0.0	+0.3	+0.1	-0.3
soil	soil sample 4; outgrowth in LB	-1.0	-0.4	-0.7	+0.5	-0.1
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.5	-0.3	+0.8	-0.0	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.0	-1.1	-0.2	+0.2	+0.7
seeds	Growth on radish seeds for 72 hours	-0.6	+0.7	-0.2	-0.8	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.8	+0.1	-0.2	-1.1	+0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.2	+0.5	-0.0	-0.7	+0.2
soil	soil sample 2; outgrowth in LB	-1.1	-1.1	+0.3	+1.0	-0.2
seeds	Growth on radish seeds for 24 hours	-0.8	+0.7	+0.3	-0.6	-0.4
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.8	-0.6	+0.6	+0.2	+0.5
carbon source	L-Valine (C)	+0.1	+0.1	-0.6	+1.4	-0.7
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.0	+0.1	+0.7	+0.9	-0.4
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.9	+0.8	+0.4	+0.7	-0.5
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.9	-0.4	+0.5	+0.5	+1.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.8	+1.7	+0.2	+0.1	+0.1
stress	Gentamicin 0.008 mg/ml	+2.1	+0.1	+0.4	-0.2	-0.3
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+3.2	-0.1	-0.2	+0.3	+0.3