Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

Or view all 552 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PS417_14815	PS417_14825	PS417_14830	PS417_14835	PS417_14840
phage	P. simiae Grant Run MOI 0.1	-0.1	-1.0	+0.2	-1.6	-0.6
rhizosphere	rhizosphere sample 2; outgrowth in LB	-0.5	-1.0	+0.5	-1.0	-0.7
soil	soil sample 2; outgrowth in LB	+0.3	-0.3	-0.1	-1.1	-1.1
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3	-0.5	-0.1	-1.5	-0.3
phage	P. simiae Grant Run MOI 0.1	-0.7	+0.2	-0.0	-1.3	-0.3
soil	soil sample 8; outgrowth in LB	-0.1	+0.2	+0.4	-1.3	-0.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	-0.7	-0.1	-1.2	+0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.5	-0.0	-0.3	-1.9	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	-0.5	+0.8	-1.0	-1.1
phage	P. simiae OR Antrim MOI 0.1	-0.2	-0.7	+0.3	-1.1	+0.3
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.7	-0.1	-0.4	-0.9	+0.8
seeds	Growth on radish seeds for 72 hours	+0.6	+0.4	-0.6	-1.4	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	-0.8	+0.6	-0.6	-0.5
carbon source	L-Valine (C)	+0.4	-1.1	-0.3	+0.6	-0.6
motility	outer cut, LB soft agar motility assay	+0.5	-0.2	-0.9	-0.6	+0.4
phage	JP1 MOI 1	-0.7	+0.2	+0.5	+0.1	-1.0
phage	P. simiae OR Antrim MOI 10	-0.0	+0.3	+0.5	-1.4	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.8	+0.6	-0.5	-0.6	-1.0
soil	soil sample 4; outgrowth in LB	+0.3	+0.2	+0.7	-1.0	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.5	+0.2	+0.5	-1.0	-0.2
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.6	+0.5	+0.2	-0.9	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.8	+0.6	-0.5	+0.5	-1.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.2	-0.2	-0.4	-0.8	+1.7
motility	inner cut, LB soft agar motility assay	+1.0	-0.5	-0.3	-0.4	+0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.5	+0.9	+0.4	-1.1	-0.5
seeds	Growth on radish seeds for 24 hours	-0.0	+0.9	-0.3	-0.8	+0.7
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4	+0.7	-0.3	-0.8	+0.6
stress	Gentamicin 0.008 mg/ml	-0.0	-0.8	+0.4	+2.1	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.3	+2.7	+0.1	+0.1	-0.2
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.1	-0.2	+0.2	+3.2	-0.1