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Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF2892 and GFF2893 are separated by 166 nucleotides
GFF2893 and GFF2894 are separated by 41 nucleotides
GFF2894 and GFF2895 overlap by 4 nucleotides
GFF2895 and GFF2896 are separated by 146 nucleotides
GFF2892 - ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate), at 317,502 to 318,674
GFF2892
GFF2893 - Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Vanillate O-demethylase oxidoreductase (EC 1.14.13.-), at 318,841 to 319,827
GFF2893
GFF2894 - Transcriptional regulator, GntR family, at 319,869 to 320,651
GFF2894
GFF2895 - Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82), at 320,648 to 321,766
GFF2895
GFF2896 - Methionine synthase II (cobalamin-independent), at 321,913 to 323,034
GFF2896
Group
Condition
GFF2892
GFF2893
GFF2894
GFF2895
GFF2896
complex community
Community=Locust bean gum; Passage=4
-0.7
+0.1
-1.9
-0.2
+0.2
complex community
Community=guar; Passage=4
-0.3
-0.1
-1.4
-0.5
-0.0
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.1
-0.3
-1.0
-0.0
+0.0
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.2
-0.1
-0.9
-0.0
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.2
-0.3
-0.6
+0.0
-0.0
complex community
Community=arabino-guar; Passage=4
-0.1
+0.2
-1.2
+0.2
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.1
-0.3
-0.7
+0.2
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.1
-0.2
-0.5
-0.1
+0.0
phage
phage_bap4
-0.3
-0.1
-0.5
+0.1
-0.2
phage
phage_bap4
-0.1
+0.2
-1.0
+0.0
-0.0
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.0
+0.0
-0.6
-0.0
-0.2
vitamin
M9 with Supernatant from Cyptococcus
-0.2
-0.3
-0.2
+0.1
-0.2
phage
phage_bap4
+0.0
-0.1
-0.8
+0.1
+0.0
complex community
Community=guar; Passage=4
-0.3
+0.2
-0.3
+0.3
-0.4
complex community
Community=arabino-guar; Passage=4
+0.1
+0.2
-0.5
-0.1
-0.4
complex community
Community=Kojac gum; Passage=4
-0.0
-1.0
+1.1
-0.4
-0.2
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
+0.1
+0.0
-0.5
+0.0
-0.3
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.2
+0.0
-0.4
+0.1
-0.0
phage
phage_bap4
-0.0
-0.1
-0.5
+0.1
+0.1
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.1
-0.3
+0.2
+0.1
-0.1
complex community
Community=guar; Passage=4
-0.3
+0.6
-0.4
-0.1
-0.0
phage
phage_bap4
+0.2
+0.1
-0.5
+0.0
+0.0
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.0
-0.2
+0.4
-0.2
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.1
+0.1
+0.2
-0.0
-0.3
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.1
-0.3
+0.5
-0.1
+0.0
complex community
Community=arabino-guar; Passage=4
+0.2
-0.1
+0.7
-0.4
-0.1
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
+0.1
-0.2
+0.7
+0.1
-0.1
complex community
Community=Locust bean gum; Passage=4
+0.2
-0.3
+0.7
+0.1
+0.0
complex community
Community=Locust bean gum; Passage=4
+0.1
-0.1
+0.8
+0.2
-0.2
complex community
Community=arabino-guar; Passage=4
-0.2
-0.2
+1.4
+0.2
-0.3
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