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Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF2891 and GFF2892 are separated by 142 nucleotides
GFF2892 and GFF2893 are separated by 166 nucleotides
GFF2893 and GFF2894 are separated by 41 nucleotides
GFF2894 and GFF2895 overlap by 4 nucleotides
GFF2891 - ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 316,487 to 317,359
GFF2891
GFF2892 - ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate), at 317,502 to 318,674
GFF2892
GFF2893 - Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Vanillate O-demethylase oxidoreductase (EC 1.14.13.-), at 318,841 to 319,827
GFF2893
GFF2894 - Transcriptional regulator, GntR family, at 319,869 to 320,651
GFF2894
GFF2895 - Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82), at 320,648 to 321,766
GFF2895
Group
Condition
GFF2891
GFF2892
GFF2893
GFF2894
GFF2895
complex community
Community=Locust bean gum; Passage=4
-0.3
-0.7
+0.1
-1.9
-0.2
complex community
Community=guar; Passage=4
-0.2
-0.3
-0.1
-1.4
-0.5
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.0
-0.1
-0.3
-1.0
-0.0
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.1
-0.2
-0.1
-0.9
-0.0
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.1
-0.2
-0.3
-0.6
+0.0
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.0
-0.1
-0.3
-0.7
+0.2
complex community
Community=arabino-guar; Passage=4
-0.1
-0.1
+0.2
-1.2
+0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.0
-0.1
-0.2
-0.5
-0.1
phage
phage_bap4
-0.2
-0.3
-0.1
-0.5
+0.1
phage
phage_bap4
-0.0
-0.1
+0.2
-1.0
+0.0
phage
phage_bap4
-0.1
+0.0
-0.1
-0.8
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.1
-0.0
+0.0
-0.6
-0.0
phage
phage_bap4
-0.1
+0.0
-0.2
-0.4
+0.0
vitamin
M9 with Supernatant from Cyptococcus
-0.0
-0.2
-0.3
-0.2
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.0
-0.2
+0.0
-0.4
+0.1
complex community
Community=Kojac gum; Passage=4
-0.1
-0.0
-1.0
+1.1
-0.4
complex community
Community=guar; Passage=4
-0.2
-0.3
+0.2
-0.3
+0.3
phage
phage_bap4
+0.1
+0.2
+0.1
-0.5
+0.0
complex community
Community=guar; Passage=4
+0.1
-0.3
+0.6
-0.4
-0.1
complex community
Community=arabino-guar; Passage=4
+0.2
+0.1
+0.2
-0.5
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL
+0.1
-0.0
-0.2
+0.4
-0.2
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.0
-0.1
-0.3
+0.5
-0.1
complex community
Community=guar; Passage=4
-0.2
-0.2
+0.1
+0.1
+0.4
complex community
Community=arabino-guar; Passage=4
-0.2
+0.2
-0.1
+0.7
-0.4
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.1
+0.2
-0.2
+0.2
-0.0
complex community
Community=Locust bean gum; Passage=4
-0.0
+0.2
-0.3
+0.7
+0.1
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
+0.1
+0.1
-0.2
+0.7
+0.1
complex community
Community=Locust bean gum; Passage=1
+0.2
+0.0
+0.3
+0.3
+0.1
complex community
Community=Locust bean gum; Passage=4
-0.0
+0.1
-0.1
+0.8
+0.2
complex community
Community=arabino-guar; Passage=4
+0.0
-0.2
-0.2
+1.4
+0.2
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