Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_14700 and PS417_14710 are separated by 697 nucleotidesPS417_14710 and PS417_14715 are separated by 34 nucleotidesPS417_14715 and PS417_14720 are separated by 134 nucleotidesPS417_14720 and PS417_14725 are separated by 52 nucleotides PS417_14700: PS417_14700 - hypothetical protein, at 3,210,970 to 3,211,446 _14700 PS417_14710: PS417_14710 - isochorismatase, at 3,212,144 to 3,212,704 _14710 PS417_14715: PS417_14715 - 2-polyprenyl-6-methoxyphenol hydroxylase, at 3,212,739 to 3,214,226 _14715 PS417_14720: PS417_14720 - MarR family transcriptional regulator, at 3,214,361 to 3,214,774 _14720 PS417_14725: PS417_14725 - Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data), at 3,214,827 to 3,215,189 _14725
Group Condition PS417_14700 PS417_14710 PS417_14715 PS417_14720 PS417_14725
nitrogen source nitrate (N) N.D. -0.0 -0.3 N.D. -4.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.0 +0.0 N.D. -2.9
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.5 +0.1 N.D. -2.4
stress R2A with Polymyxin B sulfate 0.003 mg/ml N.D. -2.1 -0.3 N.D. -0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.4 -0.5 N.D. -1.5
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x N.D. -0.6 -0.1 N.D. -1.6
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x N.D. -0.4 -0.3 N.D. -1.6
carbon source 2'-Deoxyinosine 5 mM (C) N.D. -1.2 -0.5 N.D. -0.5
carbon source 2'-Deoxyinosine 5 mM (C) N.D. -2.0 -0.1 N.D. -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.4 -0.3 N.D. -2.2
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x N.D. -0.9 -0.1 N.D. -0.9
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.5 -0.2 N.D. -1.1
stress R2A with Polymyxin B sulfate 0.002 mg/ml N.D. -1.3 -0.1 N.D. -0.2
carbon source 2-Deoxy-D-Ribose 10 mM (C) N.D. -0.9 -0.2 N.D. -0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.6 +0.3 N.D. -1.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.2 -0.1 N.D. -1.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.0 -0.5 N.D. -1.0
supernatant RCH2_defined_glucose with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x N.D. -1.3 +0.0 N.D. +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.1 -0.0 N.D. -1.3
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -1.2 -0.2 N.D. +0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.4 +0.0 N.D. -1.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.4 -0.0 N.D. -1.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.3 +0.5 N.D. -0.9
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.8 -0.0 N.D. -1.4
carbon source L-Valine (C) N.D. +0.9 -0.4 N.D. -0.3
phage P. simiae ORA MOI 1 N.D. +1.3 -0.0 N.D. -0.5
phage P. simiae Grant Run MOI 0.1 N.D. +1.1 -0.2 N.D. -0.1
seeds Growth on radish seeds for 72 hours N.D. +0.9 +0.7 N.D. -0.6
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. +1.0 +0.2 N.D. +0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. +2.6 -0.4 N.D. +0.3
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PS417_14720
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