Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

Or view all 554 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PS417_14695	PS417_14700	PS417_14710	PS417_14715	PS417_14720
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.1	N.D.	-2.1	-0.3	N.D.
carbon source	2'-Deoxyinosine 5 mM (C)	+0.2	N.D.	-2.0	-0.1	N.D.
phage	P. simiae Grant Run MOI 0.1	-0.6	N.D.	-1.0	+0.1	N.D.
carbon source	2'-Deoxyinosine 5 mM (C)	+0.2	N.D.	-1.2	-0.5	N.D.
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.0	N.D.	-1.2	-0.2	N.D.
supernatant	RCH2_defined_glucose with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	-0.0	N.D.	-1.3	+0.0	N.D.
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.2	N.D.	-1.3	-0.1	N.D.
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.0	N.D.	-1.1	-0.1	N.D.
motility	inner cut, LB soft agar motility assay	-0.1	N.D.	-0.8	-0.3	N.D.
carbon source	2-Deoxy-D-Ribose 10 mM (C)	+0.1	N.D.	-0.9	-0.2	N.D.
soil	soil sample 6; outgrowth in LB	+0.3	N.D.	-0.8	-0.2	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.2	N.D.	-0.8	+0.4	N.D.
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.1	N.D.	-0.8	+0.3	N.D.
root	root sample 6; outgrowth in LB	+0.3	N.D.	-0.9	+0.1	N.D.
motility	outer cut, LB soft agar motility assay	+0.3	N.D.	-0.8	+0.1	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	N.D.	-0.3	+0.5	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.6	N.D.	-0.9	+0.1	N.D.
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4	N.D.	-0.7	+0.2	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.3	N.D.	-0.7	+0.3	N.D.
stress	Doxycycline hyclate 0.001 mg/ml	+0.7	N.D.	-0.5	-0.3	N.D.
carbon source	L-Valine (C)	-0.4	N.D.	+0.9	-0.4	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	N.D.	+0.8	-0.0	N.D.
liquid stress	Scopoletin 1 mM; liquid stress	-0.1	N.D.	+0.9	-0.2	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	N.D.	+0.9	+0.2	N.D.
phage	P. simiae Grant Run MOI 0.1	-0.1	N.D.	+1.1	-0.2	N.D.
phage	P. simiae ORA MOI 1	+0.1	N.D.	+1.3	-0.0	N.D.
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	N.D.	+1.0	+0.2	N.D.
stress	methylglyoxal 0.032 vol%	+0.4	N.D.	+1.0	+0.1	N.D.
seeds	Growth on radish seeds for 72 hours	+0.3	N.D.	+0.9	+0.7	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.1	N.D.	+2.6	-0.4	N.D.