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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF2873 and GFF2874 overlap by 4 nucleotides
GFF2874 and GFF2875 are separated by 182 nucleotides
GFF2875 and GFF2876 are separated by 55 nucleotides
GFF2876 and GFF2877 are separated by 409 nucleotides
GFF2873 - Propionyl-CoA thioesterase activity, at 296,826 to 297,269
GFF2873
GFF2874 - Deacetylases, including yeast histone deacetylase and acetoin utilization protein, at 297,266 to 298,192
GFF2874
GFF2875 - Granule-associated protein, at 298,375 to 298,926
GFF2875
GFF2876 - no description, at 298,982 to 299,353
GFF2876
GFF2877 - Ribonuclease BN, at 299,763 to 300,710
GFF2877
Group
Condition
GFF2873
GFF2874
GFF2875
GFF2876
GFF2877
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.1
-0.4
-0.3
-0.4
-0.2
complex community
Community=guar; Passage=4
-0.1
-0.4
-0.2
-0.5
-0.0
phage
phage_bap4
-0.2
-0.3
-0.3
-0.2
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.2
-0.1
-0.4
-0.1
-0.1
phage
phage_bap4
-0.2
-0.1
-0.4
+0.0
-0.0
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
-0.1
-0.3
-0.1
-0.1
-0.1
complex community
Community=arabino-guar; Passage=4
-0.1
-0.4
-0.4
+0.2
-0.0
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
+0.1
-0.3
-0.3
+0.0
-0.1
phage
phage_bap4
-0.3
-0.1
+0.1
-0.2
-0.0
complex community
Community=Locust bean gum; Passage=4
-0.3
-0.7
+0.5
-0.2
+0.2
complex community
Community=guar; Passage=4
+0.1
+0.2
-0.8
-0.2
+0.2
complex community
Community=Kojac gum; Passage=4
+0.1
-0.2
+0.2
-0.5
-0.1
complex community
Community=Locust bean gum; Passage=4
-0.1
+0.5
-0.4
-0.4
-0.1
complex community
Community=arabino-guar; Passage=4
+0.1
+0.2
-0.3
-0.2
-0.3
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
+0.0
+0.3
-0.3
-0.2
-0.0
vitamin
M9 with Supernatant from Cyptococcus
-0.0
+0.1
-0.6
+0.2
-0.0
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.1
+0.2
-0.3
-0.1
+0.0
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.0
+0.4
-0.5
-0.1
-0.0
complex community
Community=Locust bean gum; Passage=4
+0.2
+0.7
+0.0
-1.0
-0.1
vitamin
M9 with Supernatant from Cyptococcus
-0.1
+0.2
-0.1
-0.1
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.0
+0.1
-0.4
+0.2
-0.1
complex community
Community=guar; Passage=4
+0.1
+0.4
-0.5
+0.1
-0.1
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.1
+0.5
-0.4
-0.0
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.1
+0.2
-0.4
+0.5
-0.1
complex community
Community=arabino-guar; Passage=4
-0.1
+0.5
-0.5
+0.1
+0.0
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.0
+0.4
-0.2
+0.0
-0.2
complex community
Community=guar; Passage=4
+0.1
+0.3
-0.5
+0.3
+0.1
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
-0.0
+0.2
-0.2
+0.3
-0.0
phage
phage_bap4
+0.0
+0.3
-0.2
+0.2
+0.1
complex community
Community=Locust bean gum; Passage=4
+0.0
+0.3
-0.2
+0.6
+0.0
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