Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_14620 and PS417_14630 are separated by 765 nucleotidesPS417_14630 and PS417_14635 overlap by 4 nucleotidesPS417_14635 and PS417_14640 are separated by 385 nucleotidesPS417_14640 and PS417_14645 are separated by 182 nucleotides PS417_14620: PS417_14620 - hypothetical protein, at 3,194,453 to 3,194,647 _14620 PS417_14630: PS417_14630 - 3-demethylubiquinone-9 3-methyltransferase, at 3,195,413 to 3,195,895 _14630 PS417_14635: PS417_14635 - GDSL family lipase, at 3,195,892 to 3,196,788 _14635 PS417_14640: PS417_14640 - dihydrodipicolinate synthase, at 3,197,174 to 3,198,037 _14640 PS417_14645: PS417_14645 - hypothetical protein, at 3,198,220 to 3,200,418 _14645
Group Condition PS417_14620 PS417_14630 PS417_14635 PS417_14640 PS417_14645
phage P. simiae OR1 MOI 0.1 -0.0 N.D. -0.9 N.D. -0.6
phage JP1 MOI 10 -0.4 N.D. -0.2 N.D. -1.0
agar plate interaction control Taped volatile agar plate with no fungus -0.4 N.D. -0.1 N.D. -0.8
seeds Growth on radish seeds for 72 hours -0.3 N.D. -0.3 N.D. -0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.1 N.D. -0.1 N.D. -0.9
phage JP1 MOI 1 -0.2 N.D. -0.4 N.D. -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.4 N.D. +0.2 N.D. -0.6
carbon source L-Valine (C) -0.5 N.D. -0.4 N.D. +0.3
liquid stress 80% Methanol 3 mM; liquid stress -0.3 N.D. -0.5 N.D. +0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.4 N.D. -0.8 N.D. -0.2
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.4 N.D. -0.1 N.D. -0.8
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.3 N.D. -0.2 N.D. -0.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.3 N.D. +0.2 N.D. -0.8
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.6 N.D. -0.4 N.D. -0.2
stress 1-ethyl-3-methylimidazolium acetate 35 mM +0.1 N.D. +0.5 N.D. -0.6
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) +0.3 N.D. +0.2 N.D. -0.6
phage P. simiae ORA MOI 0.1 +0.7 N.D. -0.3 N.D. -0.3
stress methylglyoxal 0.032 vol% +0.2 N.D. +0.4 N.D. -0.5
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI -0.4 N.D. +0.6 N.D. +0.1
carbon source succinate (C) -0.3 N.D. +0.4 N.D. +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.2 N.D. +0.8 N.D. -0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.8 N.D. -0.1 N.D. -0.3
stress Cisplatin 0.01 mg/ml -0.3 N.D. +0.4 N.D. +0.5
phage P. simiae Grant Run MOI 0.1 -0.3 N.D. +0.0 N.D. +0.9
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.4 N.D. +0.5 N.D. -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +1.1 N.D. +0.2 N.D. -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.0 N.D. +0.7 N.D. +0.4
carbon source L-Valine (C) -0.2 N.D. +0.7 N.D. +0.8
stress Neomycin 0.04 mg/ml +0.2 N.D. +0.3 N.D. +0.8
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.3 N.D. +0.7 N.D. +0.4
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