Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_14600	PS417_14605	PS417_14610	PS417_14620	PS417_14630
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-2.2	+0.4	-0.3	+0.0	N.D.
soil	soil sample 5; outgrowth in LB	+0.8	-1.9	-0.4	-0.4	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.6	+0.1	-0.5	+0.2	N.D.
soil	soil sample 6; outgrowth in LB	-0.9	-0.2	+0.1	-0.8	N.D.
carbon source	L-Valine (C)	+0.4	-0.8	-0.7	-0.5	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.6	-0.1	-0.2	+0.2	N.D.
seeds	Growth on radish seeds for 72 hours	-1.0	-1.2	+0.7	-0.2	N.D.
phage	JP1 MOI 10	-0.2	-1.1	+0.3	-0.4	N.D.
solid stress	Fraxetin 3 mM; solid stress	-0.8	-0.8	+0.1	+0.2	N.D.
rhizosphere	rhizosphere sample 2; outgrowth in LB	-1.0	-0.4	+0.3	-0.0	N.D.
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-1.1	+0.4	-0.1	-0.1	N.D.
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.6	-1.3	+0.4	-0.4	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.5	-0.9	-0.1	+0.8	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.6	-0.7	-0.2	-0.4	N.D.
motility	inner cut, LB soft agar motility assay	+0.5	-1.1	+0.2	-0.2	N.D.
seeds	Growth on radish seeds for 72 hours	+0.4	-1.2	+0.4	+0.0	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.5	-0.8	+0.0	+0.4	N.D.
motility	outer cut, LB soft agar motility assay	+1.1	-1.0	+0.1	+0.0	N.D.
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.8	-0.9	-0.3	+0.6	N.D.
stress	methylglyoxal 0.032 vol%	-0.8	+0.3	+0.6	+0.2	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.8	-0.2	+0.5	+1.1	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.7	-0.6	+0.3	+0.3	N.D.
phage	JP1 MOI 1	+0.4	+0.9	-0.1	-0.4	N.D.
agar plate interaction control	Taped volatile agar plate with no fungus	+0.8	+0.1	+0.5	-0.4	N.D.
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+1.0	+0.1	-0.3	+0.3	N.D.
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+1.5	-0.4	+0.2	-0.1	N.D.
phage	P. simiae Grant Run MOI 10	+0.7	+0.8	-0.6	+0.4	N.D.
phage	P. simiae OR Antrim MOI 1	+0.6	+1.0	-0.5	+0.2	N.D.
phage	P. simiae Grant Run MOI 0.1	+0.9	+0.9	-0.3	-0.1	N.D.
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.3	+1.2	+0.4	+0.3	N.D.