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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF2843 and GFF2844 are separated by 11 nucleotides
GFF2844 and GFF2845 are separated by 1 nucleotides
GFF2845 and GFF2846 are separated by 127 nucleotides
GFF2846 and GFF2847 are separated by 87 nucleotides
GFF2843 - Murein hydrolase activator NlpD, at 268,157 to 269,068
GFF2843
GFF2844 - Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77), at 269,080 to 269,853
GFF2844
GFF2845 - 5'-nucleotidase SurE (EC 3.1.3.5), at 269,855 to 270,613
GFF2845
GFF2846 - Putative Zn-dependent oxidoreductase PA5234, at 270,741 to 271,727
GFF2846
GFF2847 - histone-like nucleoid-structuring protein H-NS, at 271,815 to 272,159
GFF2847
Group
Condition
GFF2843
GFF2844
GFF2845
GFF2846
GFF2847
complex community
Community=arabino-guar; Passage=4
-2.8
-3.3
-0.8
-0.4
-3.2
complex community
Community=arabino-guar; Passage=4
-2.1
-2.8
-1.1
-0.3
-3.4
complex community
Community=guar; Passage=4
-2.9
-2.3
-0.8
-0.4
-3.3
complex community
Community=Locust bean gum; Passage=4
-2.9
-2.3
-1.1
-0.2
-3.1
complex community
Community=Kojac gum; Passage=4
-3.0
-2.3
-0.8
-0.2
-3.0
complex community
Community=guar; Passage=4
-2.8
-2.1
-0.9
-0.4
-3.1
complex community
Community=Locust bean gum; Passage=4
-2.6
-2.4
-1.1
-0.2
-2.8
complex community
Community=guar; Passage=4
-3.4
-1.1
-0.6
-0.4
-3.4
complex community
Community=Locust bean gum; Passage=4
-2.5
-3.1
-0.6
-0.2
-2.2
complex community
Community=Locust bean gum; Passage=4
-2.6
-2.6
-0.9
-0.3
-2.0
complex community
Community=arabino-guar; Passage=4
-2.6
-1.7
-0.8
-0.2
-3.1
complex community
Community=guar; Passage=4
-3.0
-3.0
-0.6
-0.3
-1.4
complex community
Community=arabino-guar; Passage=4
-2.7
-1.0
-0.7
-0.2
-3.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.6
-0.6
-0.1
-0.1
-3.9
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.4
-0.7
-0.1
-0.3
-3.8
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.6
-0.4
-0.1
-0.1
-3.9
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.5
-0.4
-0.1
-0.2
-3.9
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.4
-0.4
-0.1
-0.2
-3.7
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.4
-0.5
-0.2
-0.3
-2.9
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.5
-0.5
-0.3
-0.2
-2.7
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.4
-0.8
-0.2
-0.0
-2.8
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.6
-0.6
-0.2
-0.3
-2.5
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.6
-0.3
-0.1
-0.1
-2.8
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.5
-0.4
-0.1
-0.3
-2.5
vitamin
M9 with Supernatant from Cyptococcus
-0.2
-0.3
-0.1
-0.1
-3.1
vitamin
M9 with Supernatant from Cyptococcus
-0.4
-0.8
-0.2
-0.1
-2.3
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.7
-0.4
-0.1
-0.3
-2.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.5
-0.5
-0.1
-0.2
-2.3
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.4
-0.4
+0.1
-0.0
-2.7
phage
phage_bap4
-0.3
-0.4
-0.0
-0.0
+2.8
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