Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_14460 and PS417_14465 overlap by 4 nucleotidesPS417_14465 and PS417_14470 are separated by 44 nucleotidesPS417_14470 and PS417_14475 are separated by 26 nucleotidesPS417_14475 and PS417_14480 are separated by 503 nucleotides PS417_14460: PS417_14460 - metal-binding protein, at 3,159,430 to 3,159,876 _14460 PS417_14465: PS417_14465 - membrane protein, at 3,159,873 to 3,160,316 _14465 PS417_14470: PS417_14470 - alpha/beta hydrolase, at 3,160,361 to 3,161,362 _14470 PS417_14475: PS417_14475 - 2-hydroxyacid dehydrogenase, at 3,161,389 to 3,162,342 _14475 PS417_14480: PS417_14480 - glycogen synthase, at 3,162,846 to 3,164,399 _14480
Group Condition PS417_14460 PS417_14465 PS417_14470 PS417_14475 PS417_14480
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. -0.9 +0.2 -0.4
phage P. simiae ORA MOI 10 N.D. N.D. -0.3 -0.6 -0.1
phage P. simiae ORA MOI 0.1 N.D. N.D. -0.4 -0.3 -0.2
solid stress Fraxetin 3 mM; solid stress N.D. N.D. -0.2 -0.1 -0.6
solid stress Fraxetin 1 mM; solid stress N.D. N.D. +0.2 -0.4 -0.5
solid stress Fraxetin 3 mM; solid stress N.D. N.D. +0.1 -0.4 -0.4
stress LB_noSalt with Chloride 1100 mM N.D. N.D. +0.1 +0.0 -0.7
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. N.D. +0.2 -0.5 -0.2
carbon source 2-Deoxy-D-Ribose (C) N.D. N.D. -0.2 -0.4 +0.3
supernatant control Vogels_fungal_media; pH 5.5 N.D. N.D. -0.2 +0.3 -0.4
supernatant control Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB N.D. N.D. -0.2 +0.5 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. N.D. -0.0 -0.3 +0.5
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. +0.6 -0.1 -0.3
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB N.D. N.D. -0.3 +0.6 -0.0
carbon source 2'-Deoxyinosine 5 mM (C) N.D. N.D. -0.3 +0.4 +0.1
soil soil sample 7; outgrowth in LB N.D. N.D. -0.3 +0.5 +0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. +0.2 -0.3 +0.4
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X N.D. N.D. -0.0 -0.2 +0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. -0.2 -0.0 +0.7
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) N.D. N.D. -0.1 +0.6 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. +0.2 +0.9 -0.3
seeds Growth on radish seeds for 72 hours N.D. N.D. +0.2 +0.7 -0.1
stress R2A with Polymyxin B sulfate 0.003 mg/ml N.D. N.D. +0.1 +0.4 +0.3
phage Wcs_0.1 N.D. N.D. +0.2 +0.6 +0.1
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) N.D. N.D. +0.2 +0.3 +0.4
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) N.D. N.D. +0.2 +0.4 +0.3
carbon source 2-Deoxy-D-Ribose 10 mM (C) N.D. N.D. +0.2 +0.5 +0.2
nitrogen source Inosine (N) N.D. N.D. +0.2 +0.2 +0.6
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. -0.0 +1.2 +0.2
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X N.D. N.D. -0.5 -0.0 +2.0
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PS417_14460
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PS417_14465
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PS417_14475
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PS417_14480
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