Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

Or view all 552 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PS417_14430	PS417_14435	PS417_14445	PS417_14450	PS417_14455
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.1	-0.1	-0.1	-0.1	-2.7
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.4	-0.5	-0.1	-0.3	-0.6
rhizosphere	rhizosphere sample 2; outgrowth in LB	-0.7	-1.1	+0.4	+0.0	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.0	-0.4	-0.2	+0.2	-0.1
phage	Wcs_1	-0.8	-0.3	+0.0	+0.1	-0.6
supernatant control	Vogels_fungal_media; pH 5.5	+0.1	-0.6	-0.1	-0.1	-0.7
soil	soil sample 2; outgrowth in LB	+0.2	-0.7	+0.1	-0.3	-0.6
phage	P. simiae ORA MOI 10	-0.6	-0.4	+0.2	-0.3	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.0	-0.3	+0.3	+0.1	-0.9
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.6	+0.6	+0.1	-0.1	-0.5
liquid stress	Fraxetin 2 mM; liquid stress	+0.3	+0.2	+0.2	-0.2	-0.9
supernatant	RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	+0.5	-0.5	+0.2	+0.1	-0.5
carbon source	D-Alanine (C)	+0.4	+0.1	+0.1	-0.1	-0.9
seeds	Growth on radish seeds for 72 hours	-0.4	+0.6	+0.6	-0.2	-0.8
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.2	+0.3	+0.3	+0.2	-0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.1	-0.1	-0.2	+0.7	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.7	+0.1	-0.3	-0.2	-0.3
carbon source	2'-Deoxyinosine 5 mM (C)	-0.7	-0.3	+0.2	+0.1	+0.9
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+1.2	-0.3	-0.0	-0.0	-0.6
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.2	+0.3	-0.1	+0.9	-0.7
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.4	-0.1	+0.2	+0.0	+0.8
liquid stress	80% Methanol 3 mM; liquid stress	+0.3	-0.5	+0.2	-0.0	+0.6
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.6	-0.2	+0.1	-0.4	+0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.9	-0.4	-0.1	-0.0	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	-0.4	-0.3	+0.5	+1.2
phage	Wcs_0.1	-0.5	+0.2	+0.5	+0.3	+0.2
stress	methylglyoxal 0.032 vol%	-0.5	+0.9	+0.3	-0.1	+0.1
carbon source	L-Valine (C)	+0.4	+0.7	+0.6	+0.0	-0.8
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	-0.1	+0.1	-0.0	+1.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.1	-0.3	+0.5	+0.4	-0.1