Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_14335	PS417_14340	PS417_14345	PS417_14350	PS417_14355
stress	Phosphomycin 0.003 mg/ml	+0.2	N.D.	-0.8	-1.7	-0.2
stress	Phosphomycin 0.002 mg/ml	+0.4	N.D.	-1.1	-1.6	-0.2
stress	Phosphomycin 0.001 mg/ml	+0.2	N.D.	-0.8	-1.1	+0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	-0.3	N.D.	-0.3	-0.3	-0.4
phage	JP1 MOI 0.1	+0.2	N.D.	-0.4	+0.0	-0.9
motility	inner cut, LB soft agar motility assay	+0.3	N.D.	-0.4	-0.3	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	N.D.	-0.7	-0.2	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.3	N.D.	+0.1	-0.7	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.1	N.D.	+0.3	+0.2	-0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.2	N.D.	-0.4	-0.2	+0.5
agar plate interaction control	Taped volatile agar plate with no fungus	-0.4	N.D.	-0.5	+0.6	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	N.D.	-0.1	+0.3	-0.6
phage	JP1 MOI 1	+0.1	N.D.	-0.7	-0.1	+0.6
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.4	N.D.	-0.1	-0.5	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	N.D.	-0.2	-0.5	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	N.D.	-0.6	-0.1	+0.3
phage	P. simiae OR Antrim MOI 1	+0.1	N.D.	+0.6	-0.4	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.2	N.D.	-0.4	+0.6	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	N.D.	+0.4	-0.3	+0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.2	N.D.	+0.1	-0.3	+0.5
rhizosphere	rhizosphere sample 2; outgrowth in LB	+0.2	N.D.	+0.2	+0.5	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.1	N.D.	+0.3	-0.3	+0.5
stress	methylglyoxal 0.032 vol%	-0.3	N.D.	+1.2	-0.0	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.3	N.D.	+1.4	-0.0	+0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.0	N.D.	+0.2	+0.4	+0.6
motility	outer cut, LB soft agar motility assay	+0.2	N.D.	+0.6	+0.1	+0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.1	N.D.	+1.1	+0.2	-0.1
seeds	Growth on radish seeds for 72 hours	-0.1	N.D.	+1.8	-0.2	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.3	N.D.	+0.2	+0.7	+0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	N.D.	+0.2	+0.5	+0.8