Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF2809 and GFF2810 overlap by 4 nucleotidesGFF2810 and GFF2811 overlap by 1 nucleotidesGFF2811 and GFF2812 are separated by 15 nucleotidesGFF2812 and GFF2813 are separated by 170 nucleotides GFF2809 - Putative transcription regulator, at 238,056 to 238,505 GFF2809 GFF2810 - hypothetical protein, at 238,502 to 238,975 GFF2810 GFF2811 - Transcriptional regulator, YafY family, at 238,975 to 239,685 GFF2811 GFF2812 - Replicative DNA helicase (DnaB) (EC 3.6.4.12), at 239,701 to 241,107 GFF2812 GFF2813 - LSU ribosomal protein L9p, at 241,278 to 241,730 GFF2813
Group Condition GFF2809 GFF2810 GFF2811 GFF2812 GFF2813
complex community Community=arabino-guar; Passage=4 -0.2 -0.5 -0.7 N.D. -1.1
complex community Community=guar; Passage=4 -0.5 -0.4 -0.5 N.D. -0.2
complex community Community=guar; Passage=4 -0.3 -0.2 -0.4 N.D. -0.5
complex community Community=arabino-guar; Passage=4 +0.3 -0.9 -0.4 N.D. -0.3
complex community Community=guar; Passage=4 -0.0 -0.9 -0.2 N.D. -0.2
complex community Community=guar; Passage=4 +0.3 -0.5 -0.6 N.D. -0.3
phage phage_bap4 -0.5 -0.3 -0.6 N.D. +0.3
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL -0.2 -0.4 -0.0 N.D. -0.4
complex community Community=Locust bean gum; Passage=4 +0.2 -1.0 +0.2 N.D. -0.1
vitamin M9 with calcium pantothenate 10 mg/mL -0.2 -0.6 +0.1 N.D. +0.1
complex community Community=Locust bean gum; Passage=4 +0.0 +0.1 +0.0 N.D. -0.7
vitamin M9 with Supernatant from Cyptococcus +0.1 -0.1 -0.5 N.D. -0.0
complex community Community=Locust bean gum; Passage=4 -0.3 -0.4 +0.2 N.D. +0.1
complex community Community=Kojac gum; Passage=4 -0.0 -0.5 +0.4 N.D. -0.2
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL +0.1 -0.4 -0.1 N.D. +0.2
complex community Community=Locust bean gum; Passage=4 -0.2 +0.4 -0.6 N.D. +0.1
no phage control no phage control -0.1 +0.3 -0.4 N.D. -0.0
phage phage_bap4 -0.1 +0.1 -0.3 N.D. +0.2
complex community Community=arabino-guar; Passage=4 +0.3 -0.5 -0.1 N.D. +0.2
phage phage_bap4 -0.1 -0.2 -0.2 N.D. +0.4
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL -0.0 -0.3 -0.0 N.D. +0.3
vitamin M9 with calcium pantothenate 10 mg/mL -0.2 -0.2 +0.1 N.D. +0.4
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL +0.1 +0.2 -0.3 N.D. +0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.0 -0.5 +0.5 N.D. +0.3
phage phage_bap4 +0.1 +0.4 -0.2 N.D. -0.0
complex community Community=Locust bean gum; Passage=1 +0.2 +0.4 -0.2 N.D. -0.0
complex community Community=arabino-guar; Passage=4 -0.1 +0.8 -0.4 N.D. +0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL +0.0 +0.5 -0.1 N.D. +0.1
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL +0.2 +0.6 -0.1 N.D. -0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.1 +0.5 +0.3 N.D. +0.2
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