Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_14325	PS417_14335	PS417_14340	PS417_14345	PS417_14350
stress	Phosphomycin 0.002 mg/ml	-0.1	+0.4	N.D.	-1.1	-1.6
stress	Phosphomycin 0.003 mg/ml	+0.2	+0.2	N.D.	-0.8	-1.7
stress	Phosphomycin 0.001 mg/ml	-0.2	+0.2	N.D.	-0.8	-1.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-1.6	-0.3	N.D.	+0.1	-0.0
root	root sample 6; outgrowth in LB	-1.2	+0.0	N.D.	-0.3	+0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.7	-0.2	N.D.	-0.4	-0.2
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.6	-0.2	N.D.	-0.1	-0.6
phage	JP1 MOI 1	-0.5	+0.1	N.D.	-0.7	-0.1
agar plate interaction control	Taped volatile agar plate with no fungus	-0.3	-0.4	N.D.	-0.5	+0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	+0.4	N.D.	-0.6	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.6	-0.4	N.D.	+0.1	+0.5
carbon source	2'-Deoxyinosine 5 mM (C)	-0.7	-0.1	N.D.	-0.0	+0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.7	-0.2	N.D.	+0.2	+0.3
phage	P. simiae OR Antrim MOI 1	-0.7	+0.1	N.D.	+0.6	-0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.7	-0.3	N.D.	+0.1	+0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.4	+0.1	N.D.	-0.5	-0.3
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.8	+0.2	N.D.	+0.2	+0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-1.0	-0.3	N.D.	+1.4	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.3	+0.3	N.D.	+0.2	-0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.6	+0.1	N.D.	+1.1	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.3	+0.3	N.D.	+0.2	+0.7
exudates	RCH2_defined_glucose with Brachypodium distachyon 27-day exudates 1x	+0.8	+0.2	N.D.	+0.2	-0.2
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+1.1	+0.1	N.D.	+0.1	-0.3
exudates	RCH2_defined_glucose with Brachypodium distachyon 27-day exudates 1x	+0.8	-0.1	N.D.	+0.1	+0.3
stress	methylglyoxal 0.032 vol%	+0.3	-0.3	N.D.	+1.2	-0.0
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x	+1.0	+0.2	N.D.	+0.1	-0.1
seeds	Growth on radish seeds for 72 hours	-0.3	-0.1	N.D.	+1.8	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.6	+0.2	N.D.	+0.2	+0.5
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x	+1.0	+0.2	N.D.	+0.7	-0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+2.5	-0.4	N.D.	+0.2	-0.4