Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_14310	PS417_14315	PS417_14320	PS417_14325	PS417_14335
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.0	-2.1	+0.2	-1.6	-0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.7	-1.0	+0.2	-0.8	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.0	-1.5	-0.5	-0.3	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	-1.5	-0.2	+0.4	-0.2
phage	JP1 MOI 0.1	-0.0	-2.3	+0.3	+0.2	+0.2
supernatant control	Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB	-0.4	-0.9	-0.2	+0.1	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.6	-0.6	-0.2	-0.6	+0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	-0.7	+0.1	-0.7	-0.2
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.1	-1.0	+0.1	-0.6	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	-1.7	-0.2	+0.4	-0.1
rhizosphere	rhizosphere sample 2; outgrowth in LB	+0.0	-1.5	-0.3	+0.1	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.0	-1.4	-0.2	+0.1	+0.2
phage	JP1 MOI 10	-0.1	-1.4	-0.1	+0.1	+0.4
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	-0.3	-0.8	+0.5	-0.3	-0.2
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.3	-1.2	-0.0	+0.3	-0.1
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4	-0.5	-0.7	+0.4	-0.3
root	root sample 6; outgrowth in LB	-0.0	+0.7	-0.2	-1.2	+0.0
soil	soil sample 7; outgrowth in LB	+0.6	-0.8	+0.2	-0.3	-0.0
seeds	Growth on radish seeds for 72 hours	+0.2	-0.4	+0.9	-0.8	+0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	+0.9	+0.0	-0.5	-0.2
seeds	Growth on radish seeds for 72 hours	-0.2	+1.1	-0.4	-0.3	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.2	+0.6	-0.6	+0.5	-0.1
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.2	+0.6	+0.1	-0.8	+0.2
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x	-0.3	-0.5	+0.1	+1.0	+0.2
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.0	+0.9	-0.5	-0.1	+0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	+1.2	+0.2	-0.5	+0.0
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	+1.9	-0.1	-0.7	-0.3
stress	Gentamicin 0.008 mg/ml	+0.3	+1.1	-0.2	-0.3	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	+0.8	+0.1	+0.6	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.1	-0.4	-0.3	+2.5	-0.4