Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_14295	PS417_14300	PS417_14305	PS417_14310	PS417_14315
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.3	-0.5	-0.9	-0.0	-2.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.6	-0.0	-0.9	-0.6	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.5	-0.3	-0.5	-0.0	-1.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	-0.1	-1.6	+0.1	-0.6
carbon source	Carbon source L-Citrulline 10 mM	-0.6	+0.1	-1.1	-0.3	-0.5
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	+0.0	-0.3	-0.6	-0.4	-1.0
phage	JP1 MOI 0.1	+0.2	-0.1	+0.1	-0.0	-2.3
phage	JP1 MOI 10	+0.6	-0.5	-2.4	-0.0	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	-0.1	-0.5	+0.0	-1.5
root	root sample 6; outgrowth in LB	-1.7	-0.2	-0.6	-0.0	+0.7
nophagecontrol	Only library	-1.3	-0.1	+0.5	-0.5	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.6	+0.0	-1.2	-0.5	+0.8
rhizosphere	rhizosphere sample 2; outgrowth in LB	-0.7	+0.3	+0.5	+0.0	-1.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.8	+0.1	-0.5	-0.2	-1.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	-0.2	+0.7	-0.7	-1.0
no phage control	Time6-nophage	-0.9	+0.2	-0.7	-0.1	+0.6
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.5	+0.1	-0.9	-0.2	+0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Threonine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.3	+0.1	-1.1	+0.3	+0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	-0.4	-1.0	+0.2	+0.9
phage	P. simiae ORA MOI 10	+0.8	+0.4	-0.9	-0.1	-0.4
phage	JP1 MOI 10	+0.5	+0.2	+0.7	-0.1	-1.4
rhizosphere	rhizosphere sample 8; outgrowth in LB	+0.9	-0.2	-1.0	+0.3	+0.4
stress	Gentamicin 0.008 mg/ml	-0.4	-0.0	-0.6	+0.3	+1.1
phage	P. simiae OR1 MOI 0.1	+1.2	-0.3	-0.2	+0.3	-0.2
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+1.3	+0.2	-1.0	+0.5	+0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.0	+0.7	+0.5	-0.5	+0.8
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.3	+1.3	+0.7	-0.3	+0.2
seeds	Growth on radish seeds for 72 hours	+1.0	-0.0	-0.2	-0.2	+1.1
carbon source	L-Valine (C)	-0.1	+0.3	+0.7	+0.0	+1.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3	+0.9	+0.6	-0.1	+1.9