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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF2788 and GFF2789 are separated by 92 nucleotides
GFF2789 and GFF2790 are separated by 5 nucleotides
GFF2790 and GFF2791 are separated by 116 nucleotides
GFF2791 and GFF2792 are separated by 6 nucleotides
GFF2788 - FIG003461: hypothetical protein, at 218,620 to 219,201
GFF2788
GFF2789 - Peptidyl-tRNA hydrolase ArfB (EC 3.1.1.29), at 219,294 to 219,701
GFF2789
GFF2790 - 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9), at 219,707 to 220,891
GFF2790
GFF2791 - hypothetical protein, at 221,008 to 221,343
GFF2791
GFF2792 - Chaperone protein ClpB (ATP-dependent unfoldase), at 221,350 to 223,971
GFF2792
Group
Condition
GFF2788
GFF2789
GFF2790
GFF2791
GFF2792
complex community
Community=guar; Passage=4
-0.3
+0.1
-0.2
-1.5
-0.4
complex community
Community=Locust bean gum; Passage=4
-0.3
-1.0
-0.1
-0.0
-0.2
phage
phage_bap4
+0.1
-0.5
+0.1
-0.8
-0.3
no phage control
no phage control
+0.1
-0.1
-0.1
-0.6
-0.4
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.0
-0.3
-0.1
-0.6
-0.0
phage
phage_bap4
-0.1
-0.4
-0.2
+0.2
-0.4
phage
phage_bap4
-0.1
-0.3
-0.2
-0.0
-0.3
complex community
Community=Locust bean gum; Passage=4
+0.1
-0.7
-0.2
-0.3
+0.2
vitamin
M9 with Supernatant from Cyptococcus
-0.1
-0.5
+0.1
-0.1
-0.2
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
-0.2
+0.1
+0.0
-0.5
-0.1
complex community
Community=Kojac gum; Passage=1
+0.1
-0.3
+0.1
-0.4
-0.1
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
+0.1
-0.3
-0.0
-0.3
-0.1
vitamin
M9 with Supernatant from Cyptococcus
-0.0
-0.7
-0.1
+0.4
-0.2
no phage control
no phage control
+0.2
+0.1
+0.0
-0.6
-0.2
vitamin
M9 with Supernatant from Cyptococcus
+0.2
-0.0
+0.1
-0.5
-0.2
complex community
Community=guar; Passage=4
-0.3
+0.2
+0.2
-0.2
-0.1
phage
phage_bap4
-0.0
+0.2
-0.1
+0.2
-0.4
complex community
Community=guar; Passage=4
-0.1
+0.3
-0.2
+0.1
-0.3
complex community
Community=arabino-guar; Passage=4
+0.1
+0.6
+0.1
-0.5
-0.4
complex community
Community=guar; Passage=4
+0.0
+0.2
+0.0
+0.2
-0.5
no phage control
no phage control
+0.2
+0.3
-0.0
-0.2
-0.2
phage
phage_bap4
+0.3
+0.2
-0.1
+0.2
-0.2
vitamin
M9 with Supernatant from Cyptococcus
+0.1
+0.3
+0.0
+0.3
-0.4
complex community
Community=arabino-guar; Passage=4
-0.2
+0.5
+0.4
+0.2
-0.4
complex community
Community=arabino-guar; Passage=4
-0.8
+0.5
+0.2
+0.7
-0.0
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
+0.0
-0.2
-0.0
+0.6
+0.1
vitamin
M9 with Supernatant from Cyptococcus
-0.1
+0.1
-0.1
+0.8
-0.2
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.1
+0.2
+0.1
+0.5
+0.0
complex community
Community=Locust bean gum; Passage=4
-0.0
-0.1
+0.0
+0.9
-0.1
complex community
Community=Locust bean gum; Passage=4
-0.3
+0.5
-0.0
+0.6
+0.2
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