Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_14210 and PS417_14215 are separated by 125 nucleotidesPS417_14215 and PS417_14220 overlap by 29 nucleotidesPS417_14220 and PS417_14225 are separated by 196 nucleotidesPS417_14225 and PS417_14230 are separated by 180 nucleotides PS417_14210: PS417_14210 - hypothetical protein, at 3,114,211 to 3,114,900 _14210 PS417_14215: PS417_14215 - diguanylate cyclase, at 3,115,026 to 3,115,553 _14215 PS417_14220: PS417_14220 - aldehyde-activating protein, at 3,115,525 to 3,115,998 _14220 PS417_14225: PS417_14225 - hypothetical protein, at 3,116,195 to 3,116,476 _14225 PS417_14230: PS417_14230 - tRNA-Leu, at 3,116,657 to 3,116,743 _14230
Group Condition PS417_14210 PS417_14215 PS417_14220 PS417_14225 PS417_14230
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.5 +0.1 -0.1 N.D. N.D.
carbon source L-Valine (C) -0.8 -0.3 -0.2 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.9 -0.6 +0.2 N.D. N.D.
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.5 -0.9 -0.8 N.D. N.D.
motility outer cut, LB soft agar motility assay -0.8 +0.1 -0.4 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.7 +0.1 -0.5 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.3 -0.3 -0.8 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.0 -0.0 +0.3 N.D. N.D.
phage JP1 MOI 1 -0.2 +0.3 -0.9 N.D. N.D.
root root sample 6; outgrowth in LB -0.9 +0.3 -0.1 N.D. N.D.
solid stress Fraxetin 3 mM; solid stress -1.2 +0.3 +0.3 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.1 +0.1 +0.5 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.5 +0.0 -0.9 N.D. N.D.
carbon source acetate (C) -0.7 +0.2 +0.4 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.4 -0.3 +0.6 N.D. N.D.
stress R2A with Polymyxin B sulfate 0.002 mg/ml +0.5 +0.2 -0.6 N.D. N.D.
soil soil sample 8; outgrowth in LB -0.6 +0.2 +0.6 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.9 -0.1 -0.4 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.5 +0.3 +0.8 N.D. N.D.
stress R2A with Polymyxin B sulfate 0.003 mg/ml +1.1 -0.2 +0.2 N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.6 +0.1 +0.6 N.D. N.D.
supernatant Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x +0.7 +0.3 +0.2 N.D. N.D.
exudates RCH2_defined_glucose with Brachypodium distachyon 13-day exudates 1x +0.5 +0.3 +0.4 N.D. N.D.
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.8 +0.3 +0.2 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.8 +0.2 -0.6 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.6 +0.1 +0.7 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.8 +0.1 +0.6 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.8 -0.2 +1.0 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.3 -0.0 +0.3 N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.6 +0.1 +1.6 N.D. N.D.
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