Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_14185	PS417_14195	PS417_14200	PS417_14205	PS417_14210
stress	Gentamicin 0.008 mg/ml	-0.8	-0.5	-1.7	+0.2	-0.5
seeds	Growth on radish seeds for 72 hours	-0.8	+0.4	-1.7	-0.2	-0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.8	-0.1	-0.8	+0.2	-1.5
phage	JP1 MOI 1	-0.4	-0.3	-1.2	+0.2	-0.5
carbon source	Trisodium citrate (C)	-0.0	+0.0	-2.5	+0.4	-0.0
carbon source	L-Valine (C)	+0.3	-0.8	-1.2	+0.2	-0.5
solid stress	Fraxetin 3 mM; solid stress	+0.5	-0.8	+0.4	-0.3	-1.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.6	-0.7	-0.2	+0.0	-0.9
carbon source	Trisodium citrate (C)	-0.2	-0.3	-1.2	+0.3	+0.2
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+1.6	-0.7	-1.8	+0.0	+0.0
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.2	-0.6	-0.9	+0.5	+0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.8	-0.0	-0.7	+0.2	+0.8
ecofab	LB 0.5x in EcoFAB_3.5mL	+0.3	-0.5	-0.4	-0.4	+0.6
phage	P. simiae OR Antrim MOI 1	-1.2	+0.1	+0.5	-0.2	+0.4
phage	JP1 MOI 0.1	-0.8	-0.2	+1.1	-0.0	-0.4
root	root sample 6; outgrowth in LB	+0.6	+0.5	-0.0	-0.3	-0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.7	-0.0	+0.7	-0.3	+0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.5	-0.4	+0.8	-0.4	+0.1
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+2.1	+0.1	-0.6	+0.1	-0.7
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x	+0.3	-0.1	+1.0	-0.5	+0.3
phage	P. simiae OR Antrim MOI 1	-0.5	+0.6	+0.7	-0.1	+0.4
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.0	+0.7	+0.8	-0.5	+0.2
rhizosphere	rhizosphere sample 2; outgrowth in LB	+0.6	+0.5	+0.5	+0.7	-0.5
solid stress	Fraxetin 2 mM; solid stress	+0.3	+0.4	+0.8	-0.2	+0.8
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.6	-0.0	+1.0	-0.2	+0.8
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.6	+0.1	+1.3	+0.1	+1.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.1	-0.1	+1.2	+0.6	+0.6
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+2.0	-0.6	+0.5	-0.1	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+2.0	+0.3	+0.2	+0.1	+0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.0	-0.2	+0.9	-0.2	+1.8