Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_14140	PS417_14145	PS417_14150	PS417_14155	PS417_14160
rhizosphere	rhizosphere sample 2; outgrowth in LB	-3.5	+0.2	N.D.	-0.3	-0.2
phage	JP1 MOI 10	-0.8	-0.4	N.D.	-0.8	-0.5
phage	P. simiae Grant Run MOI 10	-0.5	+0.2	N.D.	-0.6	-1.3
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-1.8	-0.0	N.D.	+0.1	-0.4
phage	JP1 MOI 1	+0.0	-0.8	N.D.	-0.9	-0.5
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-1.0	-0.4	N.D.	-0.4	-0.3
supernatant	RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	-1.4	-0.2	N.D.	-0.2	-0.2
phage	P. simiae ORA MOI 0.1	-0.1	-0.3	N.D.	-0.4	-1.1
seeds	Growth on radish seeds for 72 hours	-1.0	-0.5	N.D.	-0.0	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-2.7	+0.2	N.D.	+0.2	+0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-1.1	+0.2	N.D.	-0.7	-0.3
solid stress	80% Methanol 0.5 mM; solid stress	-1.2	-0.2	N.D.	+0.1	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-1.3	+0.2	N.D.	-0.7	+0.2
seeds	Growth on radish seeds for 24 hours	-0.9	+0.5	N.D.	-1.1	+0.0
phage	P. simiae Grant Run MOI 10	+0.3	-0.3	N.D.	-0.9	-0.3
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.6	+0.7	N.D.	-0.5	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.9	-0.7	N.D.	+0.2	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.2	+0.2	N.D.	-1.0	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-1.8	+0.1	N.D.	+0.9	-0.1
supernatant control	Vogels_fungal_media 0.1X	-0.8	+0.4	N.D.	+0.3	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.4	+0.5	N.D.	-0.1	+0.3
seeds	Growth on radish seeds for 72 hours	-1.5	+0.1	N.D.	-0.2	+1.2
phage	Wcs_1	+0.8	-0.4	N.D.	-1.0	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.8	+0.2	N.D.	-1.0	-0.2
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.9	+0.4	N.D.	+0.1	+0.6
phage	FRSphage	+1.0	-0.6	N.D.	-0.3	+0.1
phage	Wcs_0.1	+0.8	-0.2	N.D.	-0.7	+0.4
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.2	+1.2	N.D.	+0.1	+0.4
agar plate interaction control	Taped volatile agar plate with no fungus	+1.2	-0.5	N.D.	+0.0	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-1.0	+0.5	N.D.	+0.1	+0.9