Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_14110	PS417_14115	PS417_14120	PS417_14125	PS417_14130
carbon source	2'-Deoxyinosine 5 mM (C)	-0.4	-0.9	-1.5	-2.5	+0.4
root	root sample 6; outgrowth in LB	-1.0	-0.2	-0.6	-2.6	-0.3
stress	2-Furfuraldehyde 0.03 vol%	-0.0	-1.2	-1.0	-1.9	+0.4
stress	2-Furfuraldehyde 0.06 vol%	-0.0	-1.5	-1.4	-0.9	+0.1
carbon source	2'-Deoxyinosine 5 mM (C)	+0.3	-1.3	-0.8	-1.9	+0.3
solid stress	Fraxetin 3 mM; solid stress	-0.1	-1.1	-0.9	-1.2	+0.3
solid stress	Fraxetin 3 mM; solid stress	-0.1	-0.9	-0.9	-1.3	+0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.1	-1.2	-0.7	-1.0	+0.0
supernatant	Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x	-0.4	-1.1	-0.8	-0.1	-0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.2	-0.7	-0.7	-0.8	-0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.3	-0.7	-0.8	-1.4	-0.1
stress	LB_noSalt with Chloride 1100 mM	-0.6	-0.7	-0.5	-0.5	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.3	-1.0	-1.1	-0.5	+0.2
soil	soil sample 7; outgrowth in LB	-1.4	-0.9	-0.4	+0.1	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.8	-0.7	+0.0	-0.7	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.3	-0.5	-0.4	-0.9	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.1	-0.3	-0.7	-1.0	-0.5
solid stress	Fraxetin 3 mM; solid stress	+0.1	-0.6	-0.7	-1.0	-0.1
stress	Paraquat dichloride 0.008 mg/ml	+0.2	-1.2	-0.5	-0.8	+0.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.3	-0.7	-0.4	-1.0	+0.2
solid stress	Fraxetin 3 mM; solid stress	+0.1	-1.0	-1.0	-0.4	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.5	-0.4	-0.9	-0.7	-0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.6	-0.4	-0.5	-0.4	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.5	-1.3	-0.4	+1.0	+0.3
carbon source	L-Valine (C)	+0.6	-0.3	+0.4	+0.9	-0.3
stress	Chlorite 4 mM	-0.4	+0.7	+0.6	+0.7	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.8	+0.7	-0.3	+0.6	-0.2
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	-0.2	+0.7	+0.8	+0.6	-0.1
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	-0.1	+0.9	+1.0	+0.8	+0.4
stress	methylglyoxal 0.032 vol%	+1.1	+0.7	+1.1	+0.4	+0.2