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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF2762 and GFF2763 are separated by 236 nucleotides
GFF2763 and GFF2764 are separated by 37 nucleotides
GFF2764 and GFF2765 are separated by 37 nucleotides
GFF2765 and GFF2766 overlap by 4 nucleotides
GFF2762 - Glutamine ABC transporter, substrate-binding protein GlnH, at 193,476 to 194,225
GFF2762
GFF2763 - 33 kDa chaperonin HslO, at 194,462 to 195,460
GFF2763
GFF2764 - Carbonic anhydrase-like protein MJ0304, at 195,498 to 196,022
GFF2764
GFF2765 - FIG00005326: uncharacterized protein, at 196,060 to 196,872
GFF2765
GFF2766 - Pentapeptide repeat family protein, at 196,869 to 197,555
GFF2766
Group
Condition
GFF2762
GFF2763
GFF2764
GFF2765
GFF2766
complex community
Community=guar; Passage=4
-0.1
-0.2
-0.5
-0.2
N.D.
complex community
Community=guar; Passage=4
-0.1
-0.4
-0.6
+0.3
N.D.
complex community
Community=Locust bean gum; Passage=4
-0.2
-0.0
-0.7
+0.1
N.D.
phage
phage_bap4
-0.2
-0.2
-0.1
-0.3
N.D.
complex community
Community=arabino-guar; Passage=4
-0.2
-0.1
-0.2
-0.1
N.D.
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.2
+0.1
-0.3
-0.3
N.D.
complex community
Community=Kojac gum; Passage=4
+0.0
-0.4
-0.2
+0.0
N.D.
phage
phage_bap4
-0.0
-0.1
-0.2
-0.3
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.1
-0.0
-0.3
-0.2
N.D.
phage
phage_bap4
+0.0
-0.0
-0.3
-0.2
N.D.
vitamin
M9 with Supernatant from Cyptococcus
-0.2
+0.1
-0.3
-0.0
N.D.
vitamin
M9 with Supernatant from Cyptococcus
-0.1
+0.1
-0.3
-0.0
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.1
+0.1
-0.4
+0.0
N.D.
phage
phage_bap4
+0.1
-0.0
-0.1
-0.3
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.0
+0.0
-0.4
+0.2
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL
+0.1
+0.0
-0.2
-0.2
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.0
+0.0
-0.4
+0.1
N.D.
complex community
Community=Locust bean gum; Passage=4
-0.1
-0.2
-0.1
+0.3
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.2
+0.0
-0.2
+0.3
N.D.
complex community
Community=guar; Passage=4
-0.1
+0.1
-0.3
+0.2
N.D.
complex community
Community=guar; Passage=4
-0.3
+0.4
-0.3
+0.1
N.D.
complex community
Community=Locust bean gum; Passage=4
+0.0
-0.1
-0.1
+0.4
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.2
+0.1
+0.3
+0.0
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.1
+0.3
-0.0
-0.1
N.D.
complex community
Community=arabino-guar; Passage=4
+0.0
-0.1
+0.4
-0.1
N.D.
complex community
Community=Kojac gum; Passage=1
-0.0
+0.1
-0.1
+0.3
N.D.
complex community
Community=arabino-guar; Passage=4
+0.2
-0.4
+0.0
+0.6
N.D.
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
-0.0
+0.1
+0.2
+0.3
N.D.
complex community
Community=Locust bean gum; Passage=1
+0.2
-0.1
+0.2
+0.3
N.D.
complex community
Community=arabino-guar; Passage=4
+0.3
-0.4
+0.3
+0.5
N.D.
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