Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_14005	PS417_14010	PS417_14015	PS417_14020	PS417_14025
solid stress	Fraxetin 3 mM; solid stress	-0.7	-0.3	-1.0	-0.5	N.D.
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	-1.7	-0.1	-0.3	-0.2	N.D.
stress	methylglyoxal 0.032 vol%	-0.3	-0.6	-0.7	-0.6	N.D.
carbon source	octanoate (C)	-0.9	-0.1	-0.7	-0.3	N.D.
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	-1.8	+0.2	-0.3	-0.1	N.D.
stress	Doxycycline hyclate 0.001 mg/ml	-0.2	+0.0	-0.9	-0.8	N.D.
soil	soil sample 7; outgrowth in LB	-0.8	-0.4	-0.2	-0.4	N.D.
soil	soil sample 4; outgrowth in LB	-0.7	+0.1	-1.0	-0.1	N.D.
solid stress	Fraxetin 3 mM; solid stress	-0.3	-0.3	-0.6	-0.5	N.D.
motility	inner cut, LB soft agar motility assay	-0.4	-0.2	-0.8	-0.2	N.D.
soil	soil sample 6; outgrowth in LB	-0.9	-0.0	-0.4	-0.4	N.D.
solid stress	Fraxetin 3 mM; solid stress	-0.2	-0.2	-0.7	-0.5	N.D.
carbon source	octanoate (C)	-0.8	-0.0	-0.5	-0.2	N.D.
solid stress	Fraxetin 3 mM; solid stress	-0.3	-0.3	-0.7	-0.2	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	-0.3	-0.8	-0.2	N.D.
soil	soil sample 3; outgrowth in LB	-1.0	-0.4	+0.1	-0.2	N.D.
phage	P. simiae OR1 MOI 0.1	+0.1	-0.7	-0.4	-0.4	N.D.
soil	soil sample 5; outgrowth in LB	-1.0	-0.7	+0.3	+0.1	N.D.
carbon source	2'-Deoxyinosine 5 mM (C)	-0.8	+0.2	-0.7	-0.0	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	-0.1	-0.9	-0.4	N.D.
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	-0.7	+0.2	-0.2	-0.3	N.D.
carbon source	2'-Deoxyinosine 5 mM (C)	-0.5	-0.1	-0.6	+0.2	N.D.
phage	JP1 MOI 10	-0.2	-0.4	-0.6	+0.3	N.D.
soil	soil sample 8; outgrowth in LB	-0.6	-0.0	+0.4	-0.5	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	+0.2	-0.4	-0.7	N.D.
soil	soil sample 2; outgrowth in LB	-0.6	-0.3	+0.6	-0.1	N.D.
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.6	-0.3	+0.6	-0.2	N.D.
rhizosphere	rhizosphere sample 1; outgrowth in LB	-0.7	-0.2	+0.6	+0.2	N.D.
root	root sample 6; outgrowth in LB	-0.5	+0.3	+1.2	-0.3	N.D.
stress	Neomycin 0.04 mg/ml	+0.5	+0.4	+0.9	+0.8	N.D.