Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_13985	PS417_13990	PS417_13995	PS417_14000	PS417_14005
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.2	-2.2	-0.6	-0.1	-0.1
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4	-1.5	-0.3	-0.3	-0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.5	-1.4	-0.3	-0.1	-0.4
carbon source	2-Deoxy-D-Ribose 10 mM (C)	+0.2	-2.2	-0.4	-0.2	-0.0
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	-1.3	-0.2	-0.4	-0.1
solid stress	Fraxetin 3 mM; solid stress	-0.4	-0.7	-0.4	-0.3	-0.3
carbon source	2'-Deoxyinosine 5 mM (C)	+0.3	-1.1	-0.3	-0.2	-0.5
agar plate interaction	Taped volatile agar plate with Trichoderma atroviridae IMI	-0.5	-0.8	-0.1	-0.4	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.0	-1.7	+0.1	-0.1	-0.1
soil	soil sample 6; outgrowth in LB	+0.2	-0.1	-0.7	-0.2	-0.9
motility	inner cut, LB soft agar motility assay	+0.1	-1.3	+0.1	-0.1	-0.3
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	+0.4	+0.0	+0.2	-0.3	-1.7
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	+0.2	+0.3	+0.2	-0.2	-1.8
soil	soil sample 5; outgrowth in LB	-0.7	+1.1	-0.4	-0.1	-1.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.6	+0.6	-0.8	-0.2	-0.1
soil	soil sample 3; outgrowth in LB	+0.0	+0.7	-0.8	+0.2	-1.0
soil	soil sample 7; outgrowth in LB	+0.3	-0.6	+0.1	+0.2	-0.8
soil	soil sample 4; outgrowth in LB	-0.4	+0.9	-0.3	+0.1	-0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.4	+1.0	-0.3	-0.5	+0.1
carbon source	2'-Deoxyinosine 5 mM (C)	+0.3	+0.9	-0.3	-0.0	-0.8
rhizosphere	rhizosphere sample 1; outgrowth in LB	-0.1	+0.9	-0.2	+0.1	-0.7
rhizosphere	rhizosphere sample 8; outgrowth in LB	-0.1	+1.1	+0.0	-0.1	-0.7
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.8	+1.0	+0.2	+0.2	-0.2
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.7	+1.3	-0.1	-0.0	-0.1
soil	soil sample 2; outgrowth in LB	+0.3	+1.2	-0.2	-0.2	-0.6
root	root sample 6; outgrowth in LB	-0.3	+1.4	-0.2	+0.3	-0.5
phage	P. simiae Grant Run MOI 10	+0.2	+1.1	-0.3	+0.3	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	+1.5	-0.0	-0.0	+0.4
rhizosphere	rhizosphere sample 2; outgrowth in LB	+0.2	+2.0	+0.5	-0.0	-0.6
stress	Gentamicin 0.008 mg/ml	+0.5	+1.1	+0.3	-0.2	+0.5