Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_13970	PS417_13975	PS417_13980	PS417_13985	PS417_13990
carbon source	2-Deoxy-D-Ribose 10 mM (C)	-4.2	-3.4	-0.2	+0.2	-2.2
carbon source	2-Deoxy-D-Ribose (C)	-4.2	-5.5	-0.1	+0.2	+0.1
carbon source	2-Deoxy-D-Ribose 10 mM (C)	-3.8	-4.8	-0.4	-0.0	-0.2
carbon source	2-Deoxy-D-Ribose (C)	-4.0	-3.4	+0.4	-0.1	-0.2
carbon source	2-Deoxy-D-ribonic lithium salt 10 mM (C)	-3.9	-3.7	-0.2	+0.5	+0.4
carbon source	2-Deoxy-D-ribonic lithium salt 10 mM (C)	-3.9	-2.7	+0.0	+0.2	+0.3
carbon source	2-Deoxy-D-Ribose (C)	-2.4	-2.7	-0.1	-0.2	-0.3
carbon source	2-Deoxy-D-Ribose (C)	-3.0	-2.5	-0.1	-0.0	-0.0
carbon source	2-Deoxy-D-ribonic lithium salt (C)	-2.8	-2.7	-0.0	-0.1	+0.1
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.6	-0.8	-0.4	-0.4	-1.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4	-0.2	-0.3	-0.5	-1.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.6	+0.1	-0.6	-0.2	-2.2
supernatant control	Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB	-0.4	-0.1	-0.4	-0.4	-1.0
seeds	Growth on radish seeds for 72 hours	-0.4	-0.3	-0.8	+0.1	-0.7
seeds	Growth on radish seeds for 72 hours	-0.4	-0.8	-0.1	-0.7	+0.2
carbon source	2'-Deoxyinosine 5 mM (C)	+0.1	-0.1	-0.6	+0.3	-1.1
soil	soil sample 7; outgrowth in LB	-0.5	-0.6	+0.4	+0.3	-0.6
solid stress	Fraxetin 3 mM; solid stress	+0.8	-0.3	+0.2	-0.4	-0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.2	-0.0	-0.7	-0.4	+1.0
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.4	-0.1	+0.1	-0.8	+1.0
soil	soil sample 4; outgrowth in LB	-0.4	-0.4	+0.3	-0.4	+0.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.6	-0.5	-0.0	-0.3	+1.5
solid stress	Fraxetin 3 mM; solid stress	+1.2	-0.0	-0.1	-0.3	-0.6
root	root sample 6; outgrowth in LB	-0.4	-0.3	+0.2	-0.3	+1.4
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.3	+0.5	-0.0	-0.7	+1.3
rhizosphere	rhizosphere sample 8; outgrowth in LB	-0.2	-0.2	+0.6	-0.1	+1.1
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	+0.3	-0.5	+0.1	+0.4	+1.1
stress	Gentamicin 0.008 mg/ml	+0.3	+0.2	-0.1	+0.5	+1.1
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.1	+1.3	+0.2	+0.4	+0.5
rhizosphere	rhizosphere sample 2; outgrowth in LB	-0.2	+0.1	+0.9	+0.2	+2.0