Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

Or view all 554 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PS417_13960	PS417_13965	PS417_13970	PS417_13975	PS417_13980
carbon source	2-Deoxy-D-Ribose (C)	+0.1	+0.7	-4.2	-5.5	-0.1
carbon source	2-Deoxy-D-Ribose 10 mM (C)	+0.1	+0.1	-3.8	-4.8	-0.4
carbon source	2-Deoxy-D-ribonic lithium salt 10 mM (C)	-0.4	-0.0	-3.9	-3.7	-0.2
carbon source	2-Deoxy-D-Ribose 10 mM (C)	-0.3	+0.6	-4.2	-3.4	-0.2
carbon source	2-Deoxy-D-Ribose (C)	+0.1	+0.2	-4.0	-3.4	+0.4
carbon source	2-Deoxy-D-ribonic lithium salt 10 mM (C)	-0.5	+0.5	-3.9	-2.7	+0.0
carbon source	2-Deoxy-D-Ribose (C)	+0.0	-0.2	-3.0	-2.5	-0.1
carbon source	2-Deoxy-D-ribonic lithium salt (C)	+0.0	+0.0	-2.8	-2.7	-0.0
carbon source	2-Deoxy-D-Ribose (C)	+0.0	+0.3	-2.4	-2.7	-0.1
seeds	Growth on radish seeds for 72 hours	+0.2	-1.1	-0.4	-0.3	-0.8
seeds	Growth on radish seeds for 72 hours	-0.5	-0.4	-0.4	-0.8	-0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	-1.1	-0.4	-0.2	-0.3
soil	soil sample 4; outgrowth in LB	-0.4	-1.0	-0.4	-0.4	+0.3
motility	outer cut, LB soft agar motility assay	-0.2	-1.5	-0.2	-0.2	+0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	-1.1	-0.4	-0.2	-0.4
soil	soil sample 6; outgrowth in LB	+0.0	-1.5	-0.3	-0.3	+0.2
phage	P. simiae OR1 MOI 0.1	+0.0	-0.8	+0.2	-1.2	+0.1
soil	soil sample 7; outgrowth in LB	-0.4	-0.7	-0.5	-0.6	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	-1.3	-0.4	+0.3	-0.1
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.0	-0.2	-0.9	-0.7	+0.1
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	-0.1	-0.6	-0.8	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	-0.7	-0.3	-0.5	-0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5	-0.8	-0.1	-0.8	-0.2
seeds	Growth on radish seeds for 72 hours	+0.8	-0.6	-0.7	-0.3	-0.2
soil	soil sample 8; outgrowth in LB	+0.3	-0.8	-0.5	-0.2	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+1.3	-0.7	-0.1	-0.6	-0.5
rhizosphere	rhizosphere sample 2; outgrowth in LB	+0.2	-0.6	-0.2	+0.1	+0.9
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.3	+1.2	+0.1	-0.1	-0.3
solid stress	Fraxetin 3 mM; solid stress	-0.3	-0.4	+1.2	+0.0	+0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.3	+0.7	-0.3	+0.6	+0.1