Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_13935 and PS417_13940 are separated by 90 nucleotidesPS417_13940 and PS417_13945 overlap by 4 nucleotidesPS417_13945 and PS417_13950 are separated by 213 nucleotidesPS417_13950 and PS417_13955 are separated by 111 nucleotides PS417_13935: PS417_13935 - hypothetical protein, at 3,062,935 to 3,063,144 _13935 PS417_13940: PS417_13940 - racemase, at 3,063,235 to 3,063,924 _13940 PS417_13945: PS417_13945 - GNAT family acetyltransferase, at 3,063,921 to 3,064,433 _13945 PS417_13950: PS417_13950 - LuxR family transcriptional regulator, at 3,064,647 to 3,065,618 _13950 PS417_13955: PS417_13955 - protein QbdB, at 3,065,730 to 3,066,605 _13955
Group Condition PS417_13935 PS417_13940 PS417_13945 PS417_13950 PS417_13955
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.8 -0.5 -0.9 +0.1
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. -0.6 -0.7 +0.1 -0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.3 +0.6 -0.7 -0.4
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI N.D. +0.5 -1.1 +0.1 -0.2
phage P. simiae OR1 MOI 0.1 N.D. -0.1 +0.7 -0.7 -0.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.3 +0.4 -0.7 -0.4
phage JP1 MOI 10 N.D. -0.5 -0.5 +0.7 -0.1
soil soil sample 3; outgrowth in LB N.D. +1.4 -0.2 -0.5 -0.8
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. -0.4 +0.8 -0.6 +0.2
soil soil sample 2; outgrowth in LB N.D. +0.8 -0.9 +0.1 -0.0
phage P. simiae ORA MOI 0.1 N.D. -0.4 +1.0 +0.6 -0.7
soil soil sample 5; outgrowth in LB N.D. +1.6 +0.2 -1.0 -0.1
phage JP1 MOI 1 N.D. +0.5 -0.6 +0.6 +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. +1.2 +0.4 +0.0 -0.7
soil soil sample 6; outgrowth in LB N.D. +1.6 -0.1 -0.3 -0.2
phage JP1 MOI 0.1 N.D. -0.1 -0.6 +1.4 +0.3
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. +1.4 -0.6 +0.4 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. +1.3 +0.3 -0.5 +0.1
root root sample 6; outgrowth in LB N.D. +2.0 -0.0 -0.5 -0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. +1.1 +0.6 -0.3 -0.1
motility inner cut, LB soft agar motility assay N.D. -0.3 +0.5 +0.8 +0.4
carbon source 2'-Deoxyinosine 5 mM (C) N.D. +0.8 +0.5 -0.3 +0.5
seeds Growth on radish seeds for 72 hours N.D. +0.4 +0.8 +0.1 +0.5
stress R2A with Polymyxin B sulfate 0.003 mg/ml N.D. +0.7 +0.7 +0.4 +0.2
soil soil sample 8; outgrowth in LB N.D. +1.3 +0.1 +0.3 +0.3
rhizosphere rhizosphere sample 2; outgrowth in LB N.D. +2.0 +0.3 -0.4 +0.1
rhizosphere rhizosphere sample 8; outgrowth in LB N.D. +1.8 +0.1 +0.3 -0.1
soil soil sample 7; outgrowth in LB N.D. +1.1 +1.0 -0.1 +0.2
rhizosphere rhizosphere sample 1; outgrowth in LB N.D. +1.6 +0.6 -0.1 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. +1.0 +0.6 +0.5 +0.2
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