Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_13920	PS417_13925	PS417_13930	PS417_13935	PS417_13940
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	+0.5	-0.2	N.D.	-0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.5	-0.6	-0.1	N.D.	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.6	+0.4	-0.3	N.D.	+0.1
seeds	Growth on radish seeds for 72 hours	+0.6	-0.1	+0.4	N.D.	-0.8
phage	JP1 MOI 10	+0.4	-0.7	+0.3	N.D.	+0.1
phage	P. simiae OR Antrim MOI 10	-0.2	-0.6	+0.3	N.D.	+0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	+0.3	-0.5	N.D.	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.0	+0.6	-0.5	N.D.	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.1	-0.0	-0.4	N.D.	+1.0
soil	soil sample 4; outgrowth in LB	-0.1	-0.1	-0.2	N.D.	+1.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.3	-0.6	+0.0	N.D.	+1.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.0	-0.4	-0.0	N.D.	+1.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.4	-0.7	+0.2	N.D.	+1.0
soil	soil sample 3; outgrowth in LB	-0.0	-0.1	-0.3	N.D.	+1.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.1	-0.1	-0.1	N.D.	+1.2
seeds	Growth on radish seeds for 72 hours	+0.5	+0.3	-0.2	N.D.	+0.4
soil	soil sample 8; outgrowth in LB	+0.1	-0.5	+0.1	N.D.	+1.3
carbon source	2'-Deoxyinosine 5 mM (C)	+0.0	+0.2	-0.2	N.D.	+1.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.2	+0.4	+0.1	N.D.	+1.1
carbon source	2'-Deoxyinosine 5 mM (C)	+0.3	+0.2	+0.0	N.D.	+0.8
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.1	+0.7	-0.1	N.D.	+0.8
rhizosphere	rhizosphere sample 1; outgrowth in LB	+0.1	-0.2	+0.0	N.D.	+1.6
rhizosphere	rhizosphere sample 2; outgrowth in LB	+0.2	-0.5	-0.2	N.D.	+2.0
soil	soil sample 6; outgrowth in LB	-0.2	+0.4	-0.3	N.D.	+1.6
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.3	+0.7	+0.4	N.D.	+0.2
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.0	+0.3	-0.0	N.D.	+1.4
soil	soil sample 5; outgrowth in LB	-0.0	+0.1	+0.1	N.D.	+1.6
root	root sample 6; outgrowth in LB	-0.0	+0.0	-0.2	N.D.	+2.0
rhizosphere	rhizosphere sample 8; outgrowth in LB	+0.1	+0.1	+0.1	N.D.	+1.8
soil	soil sample 7; outgrowth in LB	+0.5	+0.9	-0.0	N.D.	+1.1