Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_13915 and PS417_13920 are separated by 49 nucleotidesPS417_13920 and PS417_13925 are separated by 89 nucleotidesPS417_13925 and PS417_13930 are separated by 166 nucleotidesPS417_13930 and PS417_13935 are separated by 1 nucleotides PS417_13915: PS417_13915 - cell envelope protein, at 3,058,634 to 3,060,034 _13915 PS417_13920: PS417_13920 - hypothetical protein, at 3,060,084 to 3,060,755 _13920 PS417_13925: PS417_13925 - hypothetical protein, at 3,060,845 to 3,061,339 _13925 PS417_13930: PS417_13930 - cbb3-type cytochrome c oxidase subunit I, at 3,061,506 to 3,062,933 _13930 PS417_13935: PS417_13935 - hypothetical protein, at 3,062,935 to 3,063,144 _13935
Group Condition PS417_13915 PS417_13920 PS417_13925 PS417_13930 PS417_13935
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.6 -0.2 -0.4 +0.1 N.D.
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.7 -0.2 -0.1 +0.1 N.D.
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.8 +0.0 -0.3 +0.2 N.D.
stress methylglyoxal 0.032 vol% -0.3 -0.4 +0.2 -0.3 N.D.
phage P. simiae OR Antrim MOI 10 -0.1 -0.2 -0.6 +0.3 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.1 +0.3 -0.6 +0.0 N.D.
carbon source Deoxyribonucleic from herring sperm 5 mg/mL (C) -0.3 +0.4 -0.3 +0.1 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.4 -0.6 +0.4 -0.3 N.D.
phage P. simiae Grant Run MOI 10 +0.1 +0.5 -0.5 +0.0 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.5 +0.1 -0.6 +0.1 N.D.
phage JP1 MOI 10 +0.0 +0.4 -0.7 +0.3 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.2 +0.2 +0.3 -0.5 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.4 +0.1 -0.4 +0.1 N.D.
soil soil sample 6; outgrowth in LB +0.2 -0.2 +0.4 -0.3 N.D.
phage P. simiae Grant Run MOI 0.1 +0.6 -0.4 +0.2 -0.3 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.1 +0.0 +0.6 -0.5 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.5 +0.5 -0.6 -0.1 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.5 +0.4 -0.7 +0.2 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.3 +0.2 +0.3 -0.3 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.5 -0.2 +0.5 -0.2 N.D.
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.3 +0.9 -0.1 +0.3 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.3 +0.4 +0.3 -0.2 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.2 +0.3 +0.5 +0.2 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.4 -0.1 +0.6 -0.1 N.D.
seeds Growth on radish seeds for 72 hours -0.1 +0.6 -0.1 +0.4 N.D.
seeds Growth on radish seeds for 24 hours +0.2 +0.5 +0.3 +0.0 N.D.
soil soil sample 7; outgrowth in LB -0.1 +0.5 +0.9 -0.0 N.D.
seeds Growth on radish seeds for 72 hours +0.6 +0.5 +0.3 -0.2 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.6 +0.3 +0.3 +0.1 N.D.
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.3 +0.3 +0.7 +0.4 N.D.
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