Fitness for 5 genes in Hydrogenophaga sp. GW460-11-11-14-LB1

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500 ntGFF2725 and GFF2726 are separated by 68 nucleotidesGFF2726 and GFF2727 are separated by 48 nucleotidesGFF2727 and GFF2728 are separated by 10 nucleotidesGFF2728 and GFF2729 are separated by 200 nucleotides GFF2725 - Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system, at 315,947 to 316,411 GFF2725 GFF2726 - Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12), at 316,480 to 319,488 GFF2726 GFF2727 - JmjC domain protein, at 319,537 to 320,595 GFF2727 GFF2728 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 320,606 to 323,590 GFF2728 GFF2729 - hypothetical protein, at 323,791 to 324,093 GFF2729
Group Condition GFF2725 GFF2726 GFF2727 GFF2728 GFF2729
carbon source Ying_Others16 rep A; time point 3 -2.8 -4.5 -0.1 +0.2 N.D.
carbon source Ying_sugar7 rep B; time point 3 -2.7 -3.9 -0.1 +0.1 N.D.
carbon source Ying_Others16 rep B; time point 2 -2.5 -4.0 +0.1 +0.0 N.D.
carbon source Ying_Others16 rep A; time point 2 -2.4 -3.8 -0.0 +0.2 N.D.
carbon source Ying_Others16 rep C; time point 2 -2.5 -3.4 -0.1 +0.2 N.D.
carbon source Ying_Others16 rep A; time point 1 -2.5 -3.4 +0.1 +0.2 N.D.
carbon source Ying_Others16 rep C; time point 3 -2.5 -3.5 -0.0 +0.4 N.D.
carbon source Ying_Others16 rep B; time point 1 -1.9 -3.4 +0.0 +0.1 N.D.
carbon source Ying_Others16 rep C; time point 1 -2.2 -2.8 -0.0 +0.2 N.D.
carbon source Ying_AminoAcid20 rep C; time point 3 -1.9 -2.6 -0.1 +0.3 N.D.
carbon source Ying_OrganicAcid7 rep B; time point 3 -1.8 -2.6 -0.0 +0.2 N.D.
carbon source Ying_OrganicAcid7 rep A; time point 3 -1.4 -2.9 +0.0 +0.3 N.D.
carbon source Ying_AminoAcid20 rep B; time point 3 -1.6 -2.5 -0.0 +0.2 N.D.
carbon source Ying_OrganicAcid7 rep C; time point 3 -1.5 -2.5 -0.2 +0.1 N.D.
carbon source Ying_all64 rep C; time point 3 -1.6 -2.0 -0.1 -0.1 N.D.
carbon source Ying_AminoAcid20 rep A; time point 3 -1.5 -2.3 -0.0 +0.1 N.D.
carbon source Ying_OrganicAcid7 rep B; time point 2 -0.9 -2.0 -0.1 +0.1 N.D.
carbon source Ying_AminoAcid20 rep A; time point 2 -1.2 -1.6 -0.0 +0.1 N.D.
carbon source Ying_OrganicAcid7 rep A; time point 2 -0.9 -1.7 -0.2 +0.2 N.D.
carbon source Ying_all64 rep C; time point 2 -1.2 -1.5 -0.1 +0.3 N.D.
carbon source Ying_AminoAcid20 rep B; time point 2 -1.0 -1.6 +0.1 +0.1 N.D.
carbon source Ying_OrganicAcid7 rep C; time point 2 -0.7 -1.9 +0.1 +0.1 N.D.
carbon source Ying_AminoAcid20 rep C; time point 2 -0.9 -1.5 -0.0 +0.1 N.D.
carbon source Ying_OrganicAcid7 rep C; time point 1 -0.4 -1.0 +0.0 +0.4 N.D.
carbon source Ying_AminoAcid20 rep C; time point 1 -0.2 -0.6 -0.2 +0.0 N.D.
carbon source Ying_OrganicAcid7 rep B; time point 1 -0.4 -1.0 +0.0 +0.4 N.D.
carbon source Ying_all64 rep B; time point 3 -0.3 -0.6 +0.1 +0.0 N.D.
carbon source Ying_all64 rep A; time point 3 -0.5 -0.5 -0.1 +0.3 N.D.
carbon source Ying_OrganicAcid7 rep A; time point 1 -0.2 -0.4 +0.1 +0.4 N.D.
carbon source Ying_all64 rep A; time point 2 -0.2 -0.3 +0.1 +0.3 N.D.
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